Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 14 studies | 57% ± 19% | |
astrocyte | 14 studies | 47% ± 19% | |
glutamatergic neuron | 13 studies | 56% ± 26% | |
GABAergic neuron | 11 studies | 57% ± 26% | |
neuron | 6 studies | 33% ± 14% | |
interneuron | 6 studies | 68% ± 21% | |
granule cell | 4 studies | 44% ± 14% | |
amacrine cell | 4 studies | 36% ± 5% | |
retina horizontal cell | 4 studies | 35% ± 11% | |
retinal rod cell | 4 studies | 26% ± 6% | |
GABAergic interneuron | 3 studies | 68% ± 2% | |
microglial cell | 3 studies | 27% ± 12% | |
GABAergic amacrine cell | 3 studies | 46% ± 10% | |
glycinergic amacrine cell | 3 studies | 33% ± 8% | |
oligodendrocyte | 3 studies | 31% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 6417.49 | 2634 / 2642 | 100% | 82.72 | 702 / 705 |
adrenal gland | 100% | 4577.71 | 258 / 258 | 90% | 39.53 | 207 / 230 |
ovary | 65% | 913.85 | 117 / 180 | 31% | 2.99 | 133 / 430 |
spleen | 46% | 380.96 | 110 / 241 | 0% | 0 | 0 / 0 |
breast | 17% | 147.35 | 77 / 459 | 5% | 0.20 | 55 / 1118 |
uterus | 6% | 46.78 | 10 / 170 | 14% | 1.68 | 62 / 459 |
esophagus | 13% | 106.26 | 183 / 1445 | 4% | 0.16 | 7 / 183 |
adipose | 8% | 71.39 | 101 / 1204 | 0% | 0 | 0 / 0 |
lung | 1% | 5.78 | 6 / 578 | 6% | 0.42 | 74 / 1155 |
pancreas | 0% | 0 | 0 / 328 | 7% | 0.81 | 12 / 178 |
prostate | 3% | 23.21 | 8 / 245 | 3% | 0.08 | 14 / 502 |
skin | 0% | 1.95 | 5 / 1809 | 5% | 0.62 | 25 / 472 |
thymus | 0% | 0 | 0 / 653 | 5% | 0.34 | 28 / 605 |
eye | 0% | 0 | 0 / 0 | 4% | 0.31 | 3 / 80 |
kidney | 0% | 0 | 0 / 89 | 4% | 0.45 | 32 / 901 |
intestine | 2% | 12.04 | 18 / 966 | 1% | 0.07 | 6 / 527 |
stomach | 1% | 5.77 | 3 / 359 | 2% | 0.11 | 6 / 286 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.18 | 1 / 45 |
bladder | 0% | 0 | 0 / 21 | 2% | 0.10 | 11 / 504 |
liver | 0% | 0 | 0 / 226 | 1% | 0.04 | 3 / 406 |
heart | 0% | 2.43 | 4 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.41 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001764 | Biological process | neuron migration |
GO_0007158 | Biological process | neuron cell-cell adhesion |
GO_0007626 | Biological process | locomotory behavior |
GO_0043204 | Cellular component | perikaryon |
GO_0005575 | Cellular component | cellular_component |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0005768 | Cellular component | endosome |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0016020 | Cellular component | membrane |
Gene name | ASTN1 |
Protein name | Astrotactin 1 (Astrotactin, isoform CRA_b) Astrotactin-1 Astrotactin 1 ASTN1 protein |
Synonyms | KIAA0289 ASTN hCG_23756 |
Description | FUNCTION: Neuronal adhesion molecule that is required for normal migration of young postmitotic neuroblasts along glial fibers, especially in the cerebellum. Required for normal rate of migration of granule cells during brain development and for normal cerebellum development. . |
Accessions | ENST00000424564.2 [O14525-3] Q96BL7 A6H8Y4 ENST00000361833.7 [O14525-2] ENST00000367657.7 O14525 B1AJS1 |