Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| hepatocyte | 6 studies | 91% ± 6% | |
| enterocyte | 6 studies | 54% ± 13% | |
| cholangiocyte | 4 studies | 64% ± 24% | |
| hepatic stellate cell | 3 studies | 68% ± 25% | |
| endothelial cell | 3 studies | 56% ± 28% | |
| epithelial cell | 3 studies | 32% ± 5% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| liver | 4 studies | 68% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| liver | 100% | 189502.29 | 226 / 226 | 99% | 785.87 | 400 / 406 |
| blood vessel | 96% | 851.20 | 1286 / 1335 | 0% | 0 | 0 / 0 |
| heart | 95% | 2179.97 | 814 / 861 | 0% | 0 | 0 / 0 |
| adipose | 73% | 526.56 | 875 / 1204 | 0% | 0 | 0 / 0 |
| intestine | 51% | 10427.80 | 490 / 966 | 11% | 2.77 | 56 / 527 |
| esophagus | 49% | 177.72 | 707 / 1445 | 12% | 12.75 | 22 / 183 |
| breast | 59% | 651.16 | 273 / 459 | 1% | 0.13 | 15 / 1118 |
| skin | 52% | 327.23 | 936 / 1809 | 2% | 0.09 | 10 / 472 |
| kidney | 18% | 70.66 | 16 / 89 | 34% | 4.45 | 308 / 901 |
| spleen | 48% | 417.03 | 115 / 241 | 0% | 0 | 0 / 0 |
| stomach | 25% | 59.08 | 89 / 359 | 22% | 4.86 | 63 / 286 |
| bladder | 38% | 82.05 | 8 / 21 | 6% | 0.14 | 30 / 504 |
| ovary | 38% | 75.11 | 68 / 180 | 1% | 0.02 | 4 / 430 |
| prostate | 30% | 56.57 | 74 / 245 | 2% | 0.03 | 9 / 502 |
| pancreas | 6% | 9.96 | 20 / 328 | 15% | 2.26 | 26 / 178 |
| lung | 13% | 21.22 | 74 / 578 | 7% | 1.63 | 85 / 1155 |
| muscle | 18% | 34.55 | 142 / 803 | 0% | 0 | 0 / 0 |
| uterus | 13% | 26.24 | 22 / 170 | 3% | 0.16 | 13 / 459 |
| thymus | 5% | 10.80 | 31 / 653 | 0% | 0.01 | 2 / 605 |
| peripheral blood | 5% | 17.80 | 43 / 929 | 0% | 0 | 0 / 0 |
| adrenal gland | 3% | 7.87 | 7 / 258 | 1% | 0.02 | 3 / 230 |
| brain | 2% | 3.70 | 60 / 2642 | 1% | 0.02 | 9 / 705 |
| tonsil | 0% | 0 | 0 / 0 | 2% | 0.05 | 1 / 45 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0010744 | Biological process | positive regulation of macrophage derived foam cell differentiation |
| GO_0048844 | Biological process | artery morphogenesis |
| GO_0042158 | Biological process | lipoprotein biosynthetic process |
| GO_0007283 | Biological process | spermatogenesis |
| GO_0009791 | Biological process | post-embryonic development |
| GO_0001701 | Biological process | in utero embryonic development |
| GO_0006642 | Biological process | triglyceride mobilization |
| GO_0010886 | Biological process | positive regulation of cholesterol storage |
| GO_0009615 | Biological process | response to virus |
| GO_0010628 | Biological process | positive regulation of gene expression |
| GO_0008203 | Biological process | cholesterol metabolic process |
| GO_0034379 | Biological process | very-low-density lipoprotein particle assembly |
| GO_0051649 | Biological process | establishment of localization in cell |
| GO_0019433 | Biological process | triglyceride catabolic process |
| GO_0034374 | Biological process | low-density lipoprotein particle remodeling |
| GO_0009566 | Biological process | fertilization |
| GO_0042159 | Biological process | lipoprotein catabolic process |
| GO_0030317 | Biological process | flagellated sperm motility |
| GO_0034383 | Biological process | low-density lipoprotein particle clearance |
| GO_0045540 | Biological process | regulation of cholesterol biosynthetic process |
| GO_0042953 | Biological process | lipoprotein transport |
| GO_0033344 | Biological process | cholesterol efflux |
| GO_0010884 | Biological process | positive regulation of lipid storage |
| GO_0007399 | Biological process | nervous system development |
| GO_0030301 | Biological process | cholesterol transport |
| GO_0042632 | Biological process | cholesterol homeostasis |
| GO_0042627 | Cellular component | chylomicron |
| GO_0005615 | Cellular component | extracellular space |
| GO_0005576 | Cellular component | extracellular region |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005811 | Cellular component | lipid droplet |
| GO_0034359 | Cellular component | mature chylomicron |
| GO_0005789 | Cellular component | endoplasmic reticulum membrane |
| GO_0005769 | Cellular component | early endosome |
| GO_0005790 | Cellular component | smooth endoplasmic reticulum |
| GO_0071682 | Cellular component | endocytic vesicle lumen |
| GO_0034362 | Cellular component | low-density lipoprotein particle |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
| GO_0043025 | Cellular component | neuronal cell body |
| GO_0070971 | Cellular component | endoplasmic reticulum exit site |
| GO_0005788 | Cellular component | endoplasmic reticulum lumen |
| GO_0034360 | Cellular component | chylomicron remnant |
| GO_0005829 | Cellular component | cytosol |
| GO_0034361 | Cellular component | very-low-density lipoprotein particle |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
| GO_0010008 | Cellular component | endosome membrane |
| GO_0043202 | Cellular component | lysosomal lumen |
| GO_0034363 | Cellular component | intermediate-density lipoprotein particle |
| GO_0031904 | Cellular component | endosome lumen |
| GO_0008201 | Molecular function | heparin binding |
| GO_0005543 | Molecular function | phospholipid binding |
| GO_0120020 | Molecular function | cholesterol transfer activity |
| GO_0050750 | Molecular function | low-density lipoprotein particle receptor binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0035473 | Molecular function | lipase binding |
| Gene name | APOB |
| Protein name | Apolipoprotein B (Including Ag(X) antigen) APOB protein Apolipoprotein B Apolipoprotein B-100 (Apo B-100) [Cleaved into: Apolipoprotein B-48 (Apo B-48)] Alternative protein APOB Apolipoprotein B-100 Lipoprotein B |
| Synonyms | hCG_20898 |
| Description | FUNCTION: Apolipoprotein B is a major protein constituent of chylomicrons (apo B-48), LDL (apo B-100) and VLDL (apo B-100). Apo B-100 functions as a recognition signal for the cellular binding and internalization of LDL particles by the apoB/E receptor. |
| Accessions | Q7Z7Q0 P04114 ENST00000673882.2 E1B4S7 ENST00000399256.4 E1B4S8 S5FMV1 ENST00000233242.5 P78482 S5FLF7 E1B4S9 ENST00000673739.2 L8E8C4 E1B4S6 A8MUN2 S5FVK9 C0JYY2 A0A669KB70 |
