Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| adipocyte | 9 studies | 51% ± 10% | |
| astrocyte | 7 studies | 29% ± 12% | |
| fibroblast | 6 studies | 24% ± 6% | |
| epithelial cell of proximal tubule | 5 studies | 25% ± 2% | |
| endothelial cell | 5 studies | 23% ± 4% | |
| hepatocyte | 5 studies | 40% ± 16% | |
| epithelial cell | 4 studies | 30% ± 10% | |
| GABAergic neuron | 3 studies | 49% ± 5% | |
| glutamatergic neuron | 3 studies | 43% ± 12% | |
| oligodendrocyte precursor cell | 3 studies | 27% ± 8% | |
| oligodendrocyte | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| liver | 100% | 9461.98 | 226 / 226 | 100% | 54.70 | 406 / 406 |
| stomach | 100% | 4263.31 | 358 / 359 | 100% | 29.86 | 286 / 286 |
| kidney | 100% | 6170.44 | 89 / 89 | 100% | 38.12 | 898 / 901 |
| intestine | 100% | 4211.81 | 966 / 966 | 100% | 30.06 | 525 / 527 |
| prostate | 100% | 3345.45 | 244 / 245 | 100% | 27.69 | 502 / 502 |
| thymus | 100% | 3537.70 | 652 / 653 | 100% | 49.52 | 602 / 605 |
| pancreas | 100% | 4020.38 | 327 / 328 | 99% | 25.28 | 177 / 178 |
| breast | 100% | 9257.18 | 459 / 459 | 99% | 23.74 | 1108 / 1118 |
| lung | 99% | 3339.61 | 573 / 578 | 100% | 28.97 | 1154 / 1155 |
| uterus | 100% | 3423.20 | 170 / 170 | 99% | 20.40 | 453 / 459 |
| esophagus | 100% | 5460.88 | 1441 / 1445 | 99% | 23.45 | 181 / 183 |
| bladder | 100% | 4529.43 | 21 / 21 | 97% | 23.38 | 490 / 504 |
| adrenal gland | 100% | 9375.23 | 258 / 258 | 96% | 21.18 | 221 / 230 |
| brain | 96% | 2278.62 | 2525 / 2642 | 100% | 26.47 | 705 / 705 |
| ovary | 100% | 3207.57 | 180 / 180 | 94% | 13.02 | 406 / 430 |
| skin | 95% | 4394.92 | 1718 / 1809 | 97% | 20.39 | 460 / 472 |
| adipose | 100% | 11778.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 22.07 | 29 / 29 |
| ureter | 0% | 0 | 0 / 0 | 100% | 8.47 | 1 / 1 |
| blood vessel | 100% | 3866.10 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 99% | 2666.04 | 798 / 803 | 0% | 0 | 0 / 0 |
| spleen | 99% | 1785.20 | 238 / 241 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 98% | 16.35 | 78 / 80 |
| tonsil | 0% | 0 | 0 / 0 | 96% | 17.27 | 43 / 45 |
| heart | 95% | 3856.60 | 816 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 19% | 310.60 | 175 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006101 | Biological process | citrate metabolic process |
| GO_0009791 | Biological process | post-embryonic development |
| GO_0010040 | Biological process | response to iron(II) ion |
| GO_0006417 | Biological process | regulation of translation |
| GO_0006879 | Biological process | intracellular iron ion homeostasis |
| GO_0050892 | Biological process | intestinal absorption |
| GO_0006099 | Biological process | tricarboxylic acid cycle |
| GO_0005739 | Cellular component | mitochondrion |
| GO_0070062 | Cellular component | extracellular exosome |
| GO_0005794 | Cellular component | Golgi apparatus |
| GO_0005783 | Cellular component | endoplasmic reticulum |
| GO_0005829 | Cellular component | cytosol |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0003994 | Molecular function | aconitate hydratase activity |
| GO_0046872 | Molecular function | metal ion binding |
| GO_0003723 | Molecular function | RNA binding |
| GO_0030350 | Molecular function | iron-responsive element binding |
| GO_0051538 | Molecular function | 3 iron, 4 sulfur cluster binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0051539 | Molecular function | 4 iron, 4 sulfur cluster binding |
| Gene name | ACO1 |
| Protein name | Cytoplasmic aconitate hydratase (Aconitase) (EC 4.2.1.3) (Citrate hydro-lyase) (Ferritin repressor protein) (Iron regulatory protein 1) (IRP1) (Iron-responsive element-binding protein 1) (IRE-BP 1) |
| Synonyms | IREB1 |
| Description | FUNCTION: Bifunctional iron sensor that switches between 2 activities depending on iron availability . Iron deprivation, promotes its mRNA binding activity through which it regulates the expression of genes involved in iron uptake, sequestration and utilization . Binds to iron-responsive elements (IRES) in the untranslated region of target mRNAs preventing for instance the translation of ferritin and aminolevulinic acid synthase and stabilizing the transferrin receptor mRNA . .; FUNCTION: Conversely, when cellular iron levels are high, binds a 4Fe-4S cluster which precludes RNA binding activity and promotes the aconitase activity, the isomerization of citrate to isocitrate via cis-aconitate. . |
| Accessions | P21399 ENST00000541043.5 ENST00000309951.8 ENST00000379923.5 |