Name | Number of supported studies | Average coverage | |
---|---|---|---|
adipocyte | 9 studies | 51% ± 10% | |
astrocyte | 7 studies | 29% ± 12% | |
fibroblast | 6 studies | 24% ± 6% | |
epithelial cell of proximal tubule | 5 studies | 25% ± 2% | |
endothelial cell | 5 studies | 23% ± 4% | |
hepatocyte | 5 studies | 40% ± 16% | |
epithelial cell | 4 studies | 30% ± 10% | |
GABAergic neuron | 3 studies | 49% ± 5% | |
glutamatergic neuron | 3 studies | 43% ± 12% | |
oligodendrocyte precursor cell | 3 studies | 27% ± 8% | |
oligodendrocyte | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 9461.98 | 226 / 226 | 100% | 54.70 | 406 / 406 |
stomach | 100% | 4263.31 | 358 / 359 | 100% | 29.86 | 286 / 286 |
kidney | 100% | 6170.44 | 89 / 89 | 100% | 38.12 | 898 / 901 |
intestine | 100% | 4211.81 | 966 / 966 | 100% | 30.06 | 525 / 527 |
prostate | 100% | 3345.45 | 244 / 245 | 100% | 27.69 | 502 / 502 |
thymus | 100% | 3537.70 | 652 / 653 | 100% | 49.52 | 602 / 605 |
pancreas | 100% | 4020.38 | 327 / 328 | 99% | 25.28 | 177 / 178 |
breast | 100% | 9257.18 | 459 / 459 | 99% | 23.74 | 1108 / 1118 |
lung | 99% | 3339.61 | 573 / 578 | 100% | 28.97 | 1154 / 1155 |
uterus | 100% | 3423.20 | 170 / 170 | 99% | 20.40 | 453 / 459 |
esophagus | 100% | 5460.88 | 1441 / 1445 | 99% | 23.45 | 181 / 183 |
bladder | 100% | 4529.43 | 21 / 21 | 97% | 23.38 | 490 / 504 |
adrenal gland | 100% | 9375.23 | 258 / 258 | 96% | 21.18 | 221 / 230 |
brain | 96% | 2278.62 | 2525 / 2642 | 100% | 26.47 | 705 / 705 |
ovary | 100% | 3207.57 | 180 / 180 | 94% | 13.02 | 406 / 430 |
skin | 95% | 4394.92 | 1718 / 1809 | 97% | 20.39 | 460 / 472 |
adipose | 100% | 11778.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 22.07 | 29 / 29 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.47 | 1 / 1 |
blood vessel | 100% | 3866.10 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 2666.04 | 798 / 803 | 0% | 0 | 0 / 0 |
spleen | 99% | 1785.20 | 238 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 16.35 | 78 / 80 |
tonsil | 0% | 0 | 0 / 0 | 96% | 17.27 | 43 / 45 |
heart | 95% | 3856.60 | 816 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 310.60 | 175 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006101 | Biological process | citrate metabolic process |
GO_0009791 | Biological process | post-embryonic development |
GO_0010040 | Biological process | response to iron(II) ion |
GO_0006417 | Biological process | regulation of translation |
GO_0006879 | Biological process | intracellular iron ion homeostasis |
GO_0050892 | Biological process | intestinal absorption |
GO_0006099 | Biological process | tricarboxylic acid cycle |
GO_0005739 | Cellular component | mitochondrion |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0003994 | Molecular function | aconitate hydratase activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
GO_0030350 | Molecular function | iron-responsive element binding |
GO_0051538 | Molecular function | 3 iron, 4 sulfur cluster binding |
GO_0005515 | Molecular function | protein binding |
GO_0051539 | Molecular function | 4 iron, 4 sulfur cluster binding |
Gene name | ACO1 |
Protein name | Cytoplasmic aconitate hydratase (Aconitase) (EC 4.2.1.3) (Citrate hydro-lyase) (Ferritin repressor protein) (Iron regulatory protein 1) (IRP1) (Iron-responsive element-binding protein 1) (IRE-BP 1) |
Synonyms | IREB1 |
Description | FUNCTION: Bifunctional iron sensor that switches between 2 activities depending on iron availability . Iron deprivation, promotes its mRNA binding activity through which it regulates the expression of genes involved in iron uptake, sequestration and utilization . Binds to iron-responsive elements (IRES) in the untranslated region of target mRNAs preventing for instance the translation of ferritin and aminolevulinic acid synthase and stabilizing the transferrin receptor mRNA . .; FUNCTION: Conversely, when cellular iron levels are high, binds a 4Fe-4S cluster which precludes RNA binding activity and promotes the aconitase activity, the isomerization of citrate to isocitrate via cis-aconitate. . |
Accessions | P21399 ENST00000541043.5 ENST00000309951.8 ENST00000379923.5 |