Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 23% ± 8% | |
non-classical monocyte | 6 studies | 25% ± 10% | |
conventional dendritic cell | 6 studies | 30% ± 15% | |
epithelial cell | 6 studies | 33% ± 14% | |
ciliated cell | 6 studies | 26% ± 5% | |
classical monocyte | 5 studies | 27% ± 7% | |
fibroblast | 5 studies | 21% ± 4% | |
macrophage | 5 studies | 24% ± 5% | |
astrocyte | 5 studies | 26% ± 5% | |
neuron | 4 studies | 27% ± 12% | |
abnormal cell | 4 studies | 18% ± 3% | |
plasmacytoid dendritic cell | 4 studies | 20% ± 2% | |
pancreatic A cell | 3 studies | 24% ± 6% | |
hematopoietic precursor cell | 3 studies | 24% ± 6% | |
B cell | 3 studies | 18% ± 3% | |
Mueller cell | 3 studies | 19% ± 3% | |
type II pneumocyte | 3 studies | 25% ± 12% | |
GABAergic neuron | 3 studies | 28% ± 8% | |
glutamatergic neuron | 3 studies | 38% ± 12% | |
dendritic cell | 3 studies | 42% ± 11% | |
basal cell | 3 studies | 32% ± 4% | |
oligodendrocyte | 3 studies | 23% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1065.59 | 2642 / 2642 | 100% | 36.01 | 705 / 705 |
lung | 100% | 1086.78 | 578 / 578 | 100% | 16.95 | 1155 / 1155 |
pancreas | 100% | 705.93 | 328 / 328 | 100% | 20.40 | 178 / 178 |
thymus | 100% | 1356.17 | 653 / 653 | 100% | 33.67 | 605 / 605 |
intestine | 100% | 1189.87 | 966 / 966 | 100% | 13.31 | 526 / 527 |
prostate | 100% | 1422.60 | 245 / 245 | 100% | 23.54 | 501 / 502 |
uterus | 100% | 1358.87 | 170 / 170 | 100% | 19.21 | 458 / 459 |
skin | 100% | 918.06 | 1809 / 1809 | 100% | 21.64 | 470 / 472 |
ovary | 100% | 1649.21 | 180 / 180 | 100% | 13.49 | 428 / 430 |
breast | 100% | 1294.76 | 459 / 459 | 99% | 22.57 | 1112 / 1118 |
esophagus | 100% | 927.41 | 1445 / 1445 | 99% | 13.24 | 182 / 183 |
bladder | 100% | 1100.43 | 21 / 21 | 99% | 17.81 | 501 / 504 |
stomach | 100% | 768.74 | 359 / 359 | 99% | 12.16 | 284 / 286 |
adrenal gland | 100% | 1553.86 | 258 / 258 | 99% | 17.84 | 228 / 230 |
kidney | 100% | 1295.53 | 89 / 89 | 99% | 22.72 | 893 / 901 |
liver | 100% | 762.06 | 226 / 226 | 98% | 13.68 | 398 / 406 |
adipose | 100% | 1097.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 28.51 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.77 | 29 / 29 |
spleen | 100% | 1661.18 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.02 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.91 | 1 / 1 |
blood vessel | 100% | 785.36 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 929.47 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 811.38 | 856 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 308.29 | 786 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0050821 | Biological process | protein stabilization |
GO_0097196 | Cellular component | Shu complex |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | ZSWIM7 |
Protein name | Zinc finger SWIM-type containing 7 Zinc finger SWIM domain-containing protein 7 (SWIM domain-containing and Srs2-interacting protein 1 homolog) (SWIM-type zinc finger domain-containing protein 7) |
Synonyms | SWS1 |
Description | FUNCTION: Involved in early stages of the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. Required for meiotic progression, hence for fertility . . |
Accessions | ENST00000460315.5 ENST00000585208.5 ENST00000490395.5 ENST00000399277.6 ENST00000579955.1 J3QRT4 J3QS31 ENST00000486706.6 ENST00000460252.5 ENST00000472495.5 ENST00000584519.5 J3KRY0 ENST00000486655.5 J3QS07 Q19AV6 J3QLK2 ENST00000474716.5 ENST00000476496.5 ENST00000491631.5 J3QL97 |