Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 13 studies | 37% ± 17% | |
oligodendrocyte precursor cell | 12 studies | 36% ± 14% | |
glutamatergic neuron | 11 studies | 42% ± 25% | |
GABAergic neuron | 10 studies | 50% ± 23% | |
oligodendrocyte | 9 studies | 28% ± 12% | |
endothelial cell | 7 studies | 42% ± 12% | |
interneuron | 6 studies | 55% ± 17% | |
neuron | 5 studies | 47% ± 24% | |
granule cell | 4 studies | 36% ± 8% | |
amacrine cell | 4 studies | 31% ± 9% | |
retina horizontal cell | 4 studies | 32% ± 11% | |
retinal cone cell | 4 studies | 44% ± 15% | |
retinal rod cell | 4 studies | 30% ± 8% | |
type II pneumocyte | 4 studies | 25% ± 4% | |
GABAergic interneuron | 3 studies | 39% ± 3% | |
GABAergic amacrine cell | 3 studies | 29% ± 8% | |
Mueller cell | 3 studies | 23% ± 5% | |
glycinergic amacrine cell | 3 studies | 26% ± 6% | |
retinal ganglion cell | 3 studies | 32% ± 9% | |
ependymal cell | 3 studies | 30% ± 17% | |
endothelial cell of lymphatic vessel | 3 studies | 26% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 732.41 | 244 / 245 | 98% | 7.91 | 493 / 502 |
brain | 100% | 882.84 | 2631 / 2642 | 98% | 10.69 | 692 / 705 |
adrenal gland | 100% | 3424.29 | 258 / 258 | 94% | 10.54 | 216 / 230 |
thymus | 100% | 1257.72 | 653 / 653 | 94% | 16.17 | 567 / 605 |
intestine | 100% | 942.35 | 962 / 966 | 91% | 7.76 | 480 / 527 |
stomach | 98% | 452.04 | 353 / 359 | 89% | 8.64 | 255 / 286 |
kidney | 100% | 564.44 | 89 / 89 | 84% | 7.84 | 758 / 901 |
esophagus | 99% | 660.56 | 1424 / 1445 | 75% | 6.69 | 138 / 183 |
pancreas | 99% | 474.72 | 324 / 328 | 72% | 3.35 | 129 / 178 |
lung | 93% | 408.44 | 537 / 578 | 74% | 4.98 | 849 / 1155 |
breast | 90% | 406.63 | 415 / 459 | 65% | 4.25 | 726 / 1118 |
bladder | 100% | 786.76 | 21 / 21 | 53% | 3.45 | 265 / 504 |
uterus | 100% | 782.09 | 170 / 170 | 49% | 2.54 | 227 / 459 |
ovary | 100% | 1993.25 | 180 / 180 | 35% | 1.77 | 150 / 430 |
skin | 71% | 253.59 | 1286 / 1809 | 55% | 3.12 | 260 / 472 |
spleen | 100% | 425.95 | 240 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 503.70 | 1319 / 1335 | 0% | 0 | 0 / 0 |
adipose | 84% | 267.60 | 1017 / 1204 | 0% | 0 | 0 / 0 |
liver | 20% | 38.67 | 46 / 226 | 57% | 4.02 | 230 / 406 |
heart | 74% | 221.05 | 634 / 861 | 0% | 0 | 0 / 0 |
muscle | 70% | 164.89 | 565 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 49% | 2.08 | 22 / 45 |
eye | 0% | 0 | 0 / 0 | 29% | 1.29 | 23 / 80 |
peripheral blood | 3% | 6.84 | 30 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0031462 | Cellular component | Cul2-RING ubiquitin ligase complex |
GO_0005615 | Cellular component | extracellular space |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | ZSWIM5 |
Protein name | Zinc finger SWIM domain-containing protein 5 |
Synonyms | KIAA1511 |
Description | |
Accessions | Q9P217 ENST00000359600.6 |