Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 13 studies | 19% ± 3% | |
endothelial cell | 10 studies | 26% ± 8% | |
glutamatergic neuron | 8 studies | 37% ± 25% | |
oligodendrocyte precursor cell | 7 studies | 26% ± 6% | |
platelet | 6 studies | 26% ± 6% | |
CD16-positive, CD56-dim natural killer cell, human | 6 studies | 20% ± 4% | |
neuron | 6 studies | 28% ± 10% | |
macrophage | 6 studies | 20% ± 3% | |
GABAergic neuron | 6 studies | 37% ± 20% | |
fibroblast | 5 studies | 22% ± 7% | |
epithelial cell | 5 studies | 36% ± 14% | |
astrocyte | 5 studies | 28% ± 5% | |
oligodendrocyte | 5 studies | 23% ± 5% | |
non-classical monocyte | 4 studies | 19% ± 4% | |
hematopoietic precursor cell | 4 studies | 24% ± 5% | |
retina horizontal cell | 4 studies | 25% ± 10% | |
interneuron | 4 studies | 38% ± 22% | |
microglial cell | 3 studies | 17% ± 1% | |
smooth muscle cell | 3 studies | 21% ± 4% | |
amacrine cell | 3 studies | 32% ± 11% | |
retinal rod cell | 3 studies | 22% ± 3% | |
ciliated cell | 3 studies | 32% ± 7% | |
CD8-positive, alpha-beta T cell | 3 studies | 16% ± 1% | |
dendritic cell | 3 studies | 24% ± 4% | |
granulocyte monocyte progenitor cell | 3 studies | 22% ± 2% | |
megakaryocyte | 3 studies | 29% ± 10% | |
basal cell | 3 studies | 32% ± 8% | |
transit amplifying cell | 3 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3337.90 | 2642 / 2642 | 100% | 80.25 | 705 / 705 |
esophagus | 100% | 1442.77 | 1445 / 1445 | 100% | 33.46 | 183 / 183 |
ovary | 100% | 1197.38 | 180 / 180 | 100% | 49.11 | 430 / 430 |
prostate | 100% | 1484.31 | 245 / 245 | 100% | 52.25 | 502 / 502 |
stomach | 100% | 1031.10 | 359 / 359 | 100% | 33.99 | 286 / 286 |
uterus | 100% | 1406.08 | 170 / 170 | 100% | 59.39 | 459 / 459 |
breast | 100% | 1477.42 | 459 / 459 | 100% | 56.43 | 1117 / 1118 |
thymus | 100% | 1427.78 | 653 / 653 | 100% | 46.84 | 604 / 605 |
intestine | 100% | 1409.84 | 966 / 966 | 100% | 37.87 | 526 / 527 |
kidney | 100% | 1508.64 | 89 / 89 | 100% | 32.83 | 898 / 901 |
lung | 99% | 1210.06 | 575 / 578 | 100% | 44.75 | 1155 / 1155 |
bladder | 100% | 1490.67 | 21 / 21 | 99% | 46.05 | 501 / 504 |
skin | 100% | 1639.71 | 1808 / 1809 | 99% | 85.72 | 469 / 472 |
adrenal gland | 100% | 1586.20 | 258 / 258 | 99% | 47.76 | 227 / 230 |
pancreas | 97% | 616.48 | 318 / 328 | 99% | 36.48 | 177 / 178 |
liver | 91% | 520.50 | 205 / 226 | 96% | 20.58 | 390 / 406 |
adipose | 100% | 1373.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 49.49 | 29 / 29 |
spleen | 100% | 1321.50 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 49.61 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 28.01 | 1 / 1 |
blood vessel | 100% | 1406.14 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1180.85 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 1764.03 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 42.26 | 78 / 80 |
peripheral blood | 85% | 840.71 | 793 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043489 | Biological process | RNA stabilization |
GO_0005730 | Cellular component | nucleolus |
GO_0022625 | Cellular component | cytosolic large ribosomal subunit |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZCCHC17 |
Protein name | Zinc finger CCHC-type containing 17 Zinc finger CCHC domain-containing protein 17 (Nucleolar protein of 40 kDa) (pNO40) (Pnn-interacting nucleolar protein) (Putative S1 RNA-binding domain protein) (PS1D protein) |
Synonyms | PS1D HSPC243 LDC4 HSPC251 |
Description | |
Accessions | ENST00000618216.4 A0A087WYV3 ENST00000616859.4 ENST00000373714.5 [Q9NP64-1] A0A087WXU5 ENST00000616393.4 ENST00000546109.5 [Q9NP64-3] A0A0D9SEW3 Q9NP64 A0A087WXF8 ENST00000615916.4 A0A087WYF0 ENST00000344147.10 [Q9NP64-1] ENST00000627541.1 |