Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1071.37 | 459 / 459 | 100% | 27.00 | 1118 / 1118 |
esophagus | 100% | 1282.27 | 1445 / 1445 | 100% | 21.12 | 183 / 183 |
liver | 100% | 582.65 | 226 / 226 | 100% | 18.26 | 406 / 406 |
prostate | 100% | 1290.12 | 245 / 245 | 100% | 33.37 | 502 / 502 |
stomach | 100% | 1217.12 | 359 / 359 | 100% | 19.60 | 286 / 286 |
thymus | 100% | 2030.25 | 653 / 653 | 100% | 42.12 | 605 / 605 |
kidney | 100% | 915.96 | 89 / 89 | 100% | 20.21 | 900 / 901 |
brain | 100% | 942.72 | 2638 / 2642 | 100% | 32.46 | 705 / 705 |
intestine | 100% | 1291.97 | 966 / 966 | 100% | 19.24 | 526 / 527 |
bladder | 100% | 1195.00 | 21 / 21 | 100% | 19.91 | 503 / 504 |
uterus | 100% | 1261.34 | 170 / 170 | 100% | 25.37 | 458 / 459 |
ovary | 100% | 1162.62 | 180 / 180 | 100% | 14.21 | 429 / 430 |
pancreas | 100% | 515.95 | 327 / 328 | 100% | 21.66 | 178 / 178 |
lung | 100% | 762.13 | 576 / 578 | 100% | 21.56 | 1155 / 1155 |
adrenal gland | 100% | 966.03 | 258 / 258 | 99% | 22.99 | 227 / 230 |
skin | 100% | 836.46 | 1808 / 1809 | 95% | 16.11 | 450 / 472 |
adipose | 100% | 1068.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1412.95 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.31 | 29 / 29 |
spleen | 100% | 957.79 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.90 | 1 / 1 |
muscle | 99% | 687.56 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 559.61 | 838 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 14.45 | 76 / 80 |
peripheral blood | 54% | 282.51 | 500 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0010996 | Biological process | response to auditory stimulus |
GO_0006281 | Biological process | DNA repair |
GO_0000715 | Biological process | nucleotide-excision repair, DNA damage recognition |
GO_0009650 | Biological process | UV protection |
GO_0006289 | Biological process | nucleotide-excision repair |
GO_0070914 | Biological process | UV-damage excision repair |
GO_0034504 | Biological process | protein localization to nucleus |
GO_0006284 | Biological process | base-excision repair |
GO_1901255 | Biological process | nucleotide-excision repair involved in interstrand cross-link repair |
GO_0000110 | Cellular component | nucleotide-excision repair factor 1 complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0045171 | Cellular component | intercellular bridge |
GO_0005662 | Cellular component | DNA replication factor A complex |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0019904 | Molecular function | protein domain specific binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
GO_0003684 | Molecular function | damaged DNA binding |
Gene name | XPA |
Protein name | XPA, DNA damage recognition and repair factor Mutant xeroderma pigmentosum complementation group A DNA repair protein complementing XP-A cells (Xeroderma pigmentosum group A-complementing protein) |
Synonyms | XPAC |
Description | FUNCTION: Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation. . |
Accessions | W0FSR8 ENST00000375128.5 ENST00000462523.5 P23025 F2Z2T2 |