VMA21 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
classical monocyte	18 studies	26% ± 9%	Explore
macrophage	17 studies	25% ± 10%	Explore
conventional dendritic cell	14 studies	25% ± 14%	Explore
non-classical monocyte	13 studies	26% ± 12%	Explore
monocyte	12 studies	21% ± 4%	Explore
natural killer cell	7 studies	20% ± 4%	Explore
plasmacytoid dendritic cell	7 studies	28% ± 8%	Explore
CD4-positive, alpha-beta T cell	5 studies	19% ± 4%	Explore
epithelial cell	5 studies	30% ± 12%	Explore
CD8-positive, alpha-beta T cell	5 studies	17% ± 1%	Explore
B cell	4 studies	18% ± 3%	Explore
myeloid cell	4 studies	31% ± 14%	Explore
endothelial cell	4 studies	21% ± 4%	Explore
ciliated cell	4 studies	27% ± 10%	Explore
plasmablast	3 studies	49% ± 9%	Explore
mononuclear phagocyte	3 studies	29% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	3 studies	19% ± 1%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	18% ± 0%	Explore
hematopoietic precursor cell	3 studies	29% ± 11%	Explore
neuron	3 studies	19% ± 4%	Explore
common myeloid progenitor	3 studies	23% ± 5%	Explore
intermediate monocyte	3 studies	37% ± 13%	Explore
GABAergic neuron	3 studies	30% ± 4%	Explore
glutamatergic neuron	3 studies	34% ± 7%	Explore
dendritic cell	3 studies	50% ± 16%	Explore
pancreatic A cell	3 studies	30% ± 10%	Explore
regulatory T cell	3 studies	16% ± 1%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	5 studies	26% ± 7%	Explore
brain	4 studies	23% ± 4%	Explore
lung	3 studies	24% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	2754.33	2642 / 2642	100%	67.82	705 / 705
breast	100%	1860.91	459 / 459	100%	38.84	1118 / 1118
esophagus	100%	1505.77	1445 / 1445	100%	61.12	183 / 183
lung	100%	1786.53	578 / 578	100%	41.70	1155 / 1155
ovary	100%	1967.71	180 / 180	100%	34.60	430 / 430
prostate	100%	1642.25	245 / 245	100%	27.57	502 / 502
uterus	100%	1960.29	170 / 170	100%	43.34	459 / 459
kidney	100%	1839.48	89 / 89	100%	37.55	900 / 901
stomach	100%	1135.05	359 / 359	100%	35.44	285 / 286
thymus	100%	2136.72	653 / 653	100%	35.87	602 / 605
intestine	100%	1477.72	966 / 966	99%	32.21	524 / 527
bladder	100%	1560.10	21 / 21	99%	35.65	501 / 504
adrenal gland	100%	2554.48	258 / 258	99%	45.34	228 / 230
pancreas	100%	1099.02	327 / 328	99%	25.50	176 / 178
skin	100%	2176.97	1809 / 1809	98%	42.10	462 / 472
liver	100%	994.94	226 / 226	93%	16.76	377 / 406
adipose	100%	1992.88	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	34.50	29 / 29
spleen	100%	1686.28	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	42.85	45 / 45
ureter	0%	0	0 / 0	100%	17.63	1 / 1
blood vessel	100%	1610.24	1334 / 1335	0%	0	0 / 0
muscle	99%	1059.88	798 / 803	0%	0	0 / 0
heart	98%	1106.15	848 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	95%	24.40	76 / 80
peripheral blood	78%	1074.90	728 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0