VIPAS39 | OmnibusX

Name	Number of supported studies	Average coverage
brain	4 studies	23% ± 5%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1544.51	1445 / 1445	100%	20.49	183 / 183
ovary	100%	1775.12	180 / 180	100%	23.45	430 / 430
prostate	100%	1558.75	245 / 245	100%	19.59	502 / 502
skin	100%	1641.99	1809 / 1809	100%	27.26	472 / 472
stomach	100%	1159.26	359 / 359	100%	18.32	286 / 286
thymus	100%	1515.19	653 / 653	100%	26.04	605 / 605
uterus	100%	1596.71	170 / 170	100%	22.83	459 / 459
breast	100%	1470.64	459 / 459	100%	26.05	1117 / 1118
brain	100%	1222.85	2637 / 2642	100%	25.36	705 / 705
intestine	100%	1592.79	966 / 966	100%	18.40	526 / 527
kidney	100%	1247.25	89 / 89	100%	21.12	899 / 901
lung	99%	1229.67	575 / 578	100%	21.93	1155 / 1155
bladder	100%	1734.29	21 / 21	99%	20.97	501 / 504
pancreas	99%	844.91	326 / 328	99%	22.49	177 / 178
adrenal gland	100%	1422.56	258 / 258	99%	16.80	227 / 230
liver	100%	893.32	226 / 226	98%	13.78	399 / 406
adipose	100%	1468.84	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1656.13	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	27.68	80 / 80
lymph node	0%	0	0 / 0	100%	24.66	29 / 29
spleen	100%	1647.44	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	20.14	45 / 45
ureter	0%	0	0 / 0	100%	13.78	1 / 1
muscle	100%	1033.71	799 / 803	0%	0	0 / 0
heart	99%	974.48	851 / 861	0%	0	0 / 0
peripheral blood	99%	1493.71	917 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0007283	Biological process	spermatogenesis
GO_0046907	Biological process	intracellular transport
GO_0006886	Biological process	intracellular protein transport
GO_0017185	Biological process	peptidyl-lysine hydroxylation
GO_0043687	Biological process	post-translational protein modification
GO_0090385	Biological process	phagosome-lysosome fusion
GO_0030154	Biological process	cell differentiation
GO_0008333	Biological process	endosome to lysosome transport
GO_0030199	Biological process	collagen fibril organization
GO_0007034	Biological process	vacuolar transport
GO_0097352	Biological process	autophagosome maturation
GO_0032963	Biological process	collagen metabolic process
GO_0030897	Cellular component	HOPS complex
GO_0055037	Cellular component	recycling endosome
GO_0005769	Cellular component	early endosome
GO_0005794	Cellular component	Golgi apparatus
GO_0099023	Cellular component	vesicle tethering complex
GO_0005770	Cellular component	late endosome
GO_0005737	Cellular component	cytoplasm
GO_0005768	Cellular component	endosome
GO_0044877	Molecular function	protein-containing complex binding
GO_0005515	Molecular function	protein binding

Gene name	VIPAS39
Protein name	Spermatogenesis-defective protein 39 homolog (hSPE-39) (VPS33B-interacting protein in apical-basolateral polarity regulator) (VPS33B-interacting protein in polarity and apical restriction) Spermatogenesis-defective protein 39 homolog (VPS33B-interacting protein in apical-basolateral polarity regulator) (VPS33B-interacting protein in polarity and apical restriction) VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Synonyms	VIPAR SPE39 C14orf133
Description	FUNCTION: Proposed to be involved in endosomal maturation implicating in part VPS33B. In epithelial cells, the VPS33B:VIPAS39 complex may play a role in the apical RAB11A-dependent recycling pathway and in the maintenance of the apical-basolateral polarity . May play a role in lysosomal trafficking, probably via association with the core HOPS complex in a discrete population of endosomes; the functions seems to be independent of VPS33B . May play a role in vesicular trafficking during spermatogenesis (By similarity). May be involved in direct or indirect transcriptional regulation of E-cadherin (By similarity). .
Accessions	ENST00000556412.4 G3V549 ENST00000557658.6 [Q9H9C1-1] G3V4K3 ENST00000557466.1 ENST00000327028.8 [Q9H9C1-2] ENST00000448935.6 [Q9H9C1-2] ENST00000343765.6 [Q9H9C1-1] Q9H9C1 ENST00000553888.5 [Q9H9C1-1]

VIPAS39 report