Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 6 studies | 20% ± 5% | |
astrocyte | 4 studies | 29% ± 6% | |
dendritic cell | 4 studies | 28% ± 13% | |
endothelial cell | 3 studies | 21% ± 7% | |
microglial cell | 3 studies | 24% ± 2% | |
epithelial cell | 3 studies | 24% ± 3% | |
GABAergic neuron | 3 studies | 31% ± 12% | |
glutamatergic neuron | 3 studies | 34% ± 14% | |
alveolar macrophage | 3 studies | 26% ± 8% | |
oligodendrocyte | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 26% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2500.93 | 1445 / 1445 | 100% | 31.94 | 183 / 183 |
ovary | 100% | 2061.59 | 180 / 180 | 100% | 25.99 | 430 / 430 |
pancreas | 100% | 1579.89 | 328 / 328 | 100% | 18.84 | 178 / 178 |
skin | 100% | 3000.02 | 1809 / 1809 | 100% | 35.65 | 472 / 472 |
stomach | 100% | 2129.59 | 359 / 359 | 100% | 24.39 | 286 / 286 |
thymus | 100% | 3537.91 | 653 / 653 | 100% | 24.41 | 605 / 605 |
uterus | 100% | 2597.39 | 170 / 170 | 100% | 23.47 | 459 / 459 |
lung | 100% | 2894.48 | 578 / 578 | 100% | 22.64 | 1153 / 1155 |
brain | 100% | 2288.87 | 2637 / 2642 | 100% | 23.58 | 705 / 705 |
liver | 100% | 1912.38 | 226 / 226 | 100% | 14.87 | 405 / 406 |
kidney | 100% | 2866.72 | 89 / 89 | 100% | 21.90 | 898 / 901 |
intestine | 100% | 2612.38 | 966 / 966 | 100% | 23.21 | 525 / 527 |
bladder | 100% | 2669.86 | 21 / 21 | 100% | 22.22 | 502 / 504 |
prostate | 100% | 2654.56 | 245 / 245 | 100% | 16.64 | 500 / 502 |
adrenal gland | 100% | 3163.04 | 258 / 258 | 100% | 18.77 | 229 / 230 |
breast | 100% | 2553.88 | 459 / 459 | 99% | 18.48 | 1111 / 1118 |
adipose | 100% | 2457.56 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 35.87 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 39.55 | 29 / 29 |
muscle | 100% | 2018.02 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3678.50 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.54 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.53 | 1 / 1 |
blood vessel | 100% | 2270.51 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1650.21 | 834 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1772.49 | 899 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0099149 | Biological process | regulation of postsynaptic neurotransmitter receptor internalization |
GO_0006661 | Biological process | phosphatidylinositol biosynthetic process |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0070772 | Cellular component | PAS complex |
GO_0010008 | Cellular component | endosome membrane |
GO_0031901 | Cellular component | early endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0098830 | Cellular component | presynaptic endosome |
GO_0038023 | Molecular function | signaling receptor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | VAC14 |
Protein name | Protein VAC14 homolog (Tax1-binding protein 2) VAC14 component of PIKFYVE complex |
Synonyms | TRX TAX1BP2 |
Description | FUNCTION: Scaffold protein component of the PI(3,5)P2 regulatory complex which regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Pentamerizes into a star-shaped structure and nucleates the assembly of the complex. The pentamer binds a single copy each of PIKFYVE and FIG4 and coordinates both PIKfyve kinase activity and FIG4 phosphatase activity, being required to maintain normal levels of phosphatidylinositol 3-phosphate (PtdIns(3)P) and phosphatidylinositol 5-phosphate (PtdIns(5)P) . Plays a role in the biogenesis of endosome carrier vesicles (ECV) / multivesicular bodies (MVB) transport intermediates from early endosomes. . |
Accessions | J3QLC3 ENST00000261776.10 [Q08AM6-1] ENST00000567648.1 ENST00000566416.1 ENST00000563662.2 Q08AM6 H3BUU8 ENST00000568886.5 A0A087WT26 ENST00000568548.5 ENST00000536184.6 [Q08AM6-2] H3BN23 H3BQD9 |