Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 8 studies | 39% ± 26% | |
oligodendrocyte | 6 studies | 26% ± 8% | |
endothelial cell | 5 studies | 24% ± 5% | |
GABAergic neuron | 5 studies | 47% ± 21% | |
astrocyte | 5 studies | 31% ± 12% | |
natural killer cell | 5 studies | 17% ± 1% | |
interneuron | 5 studies | 42% ± 24% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 8% | |
B cell | 3 studies | 19% ± 2% | |
CD16-positive, CD56-dim natural killer cell, human | 3 studies | 16% ± 1% | |
CD4-positive, alpha-beta T cell | 3 studies | 19% ± 1% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 17% ± 1% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 18% ± 1% | |
naive thymus-derived CD8-positive, alpha-beta T cell | 3 studies | 19% ± 2% | |
GABAergic interneuron | 3 studies | 16% ± 1% | |
epithelial cell | 3 studies | 32% ± 8% | |
dendritic cell | 3 studies | 26% ± 7% | |
CD8-positive, alpha-beta memory T cell | 3 studies | 16% ± 1% | |
gamma-delta T cell | 3 studies | 24% ± 11% | |
neuron | 3 studies | 23% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 779.73 | 1445 / 1445 | 100% | 15.94 | 183 / 183 |
ovary | 100% | 1046.51 | 180 / 180 | 100% | 17.28 | 430 / 430 |
breast | 100% | 967.47 | 459 / 459 | 100% | 23.40 | 1117 / 1118 |
lung | 100% | 760.48 | 576 / 578 | 100% | 14.63 | 1155 / 1155 |
prostate | 100% | 745.98 | 245 / 245 | 100% | 12.17 | 500 / 502 |
brain | 100% | 556.80 | 2629 / 2642 | 100% | 13.45 | 705 / 705 |
stomach | 100% | 626.15 | 359 / 359 | 99% | 14.29 | 282 / 286 |
bladder | 100% | 888.52 | 21 / 21 | 98% | 12.01 | 496 / 504 |
thymus | 100% | 873.32 | 653 / 653 | 98% | 12.16 | 595 / 605 |
pancreas | 100% | 535.38 | 328 / 328 | 98% | 9.58 | 175 / 178 |
intestine | 100% | 789.27 | 966 / 966 | 98% | 13.47 | 518 / 527 |
uterus | 100% | 972.26 | 170 / 170 | 98% | 11.57 | 451 / 459 |
adrenal gland | 100% | 851.90 | 258 / 258 | 95% | 9.37 | 218 / 230 |
kidney | 100% | 546.93 | 89 / 89 | 94% | 8.97 | 851 / 901 |
skin | 100% | 951.74 | 1809 / 1809 | 92% | 13.57 | 434 / 472 |
liver | 100% | 483.63 | 226 / 226 | 90% | 6.79 | 364 / 406 |
adipose | 100% | 1011.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 779.15 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 11.80 | 29 / 29 |
spleen | 100% | 885.52 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.08 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.45 | 1 / 1 |
muscle | 99% | 515.24 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 510.19 | 851 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 75% | 8.97 | 60 / 80 |
peripheral blood | 67% | 491.44 | 624 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000480 | Biological process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0005730 | Cellular component | nucleolus |
GO_0032040 | Cellular component | small-subunit processome |
GO_0070181 | Molecular function | small ribosomal subunit rRNA binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0048027 | Molecular function | mRNA 5'-UTR binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | UTP23 |
Protein name | UTP23 small subunit processome component rRNA-processing protein UTP23 homolog Chromosome 8 open reading frame 53, isoform CRA_c (UTP23 small subunit processome component) |
Synonyms | hCG_1640093 C8orf53 |
Description | FUNCTION: Involved in rRNA-processing and ribosome biogenesis. . FUNCTION: Involved in rRNA-processing and ribosome biogenesis. . |
Accessions | E5RIM0 ENST00000517820.1 Q9BRU9 E5RG01 E5RGP0 E5RH13 G3XAM4 ENST00000309822.7 [Q9BRU9-1] ENST00000521071.1 E5RIC4 ENST00000521703.5 ENST00000517814.1 ENST00000520733.5 ENST00000524128.1 |