Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 34% ± 15% | |
microglial cell | 11 studies | 46% ± 17% | |
B cell | 10 studies | 29% ± 6% | |
astrocyte | 7 studies | 30% ± 13% | |
macrophage | 7 studies | 25% ± 9% | |
epithelial cell | 5 studies | 38% ± 16% | |
ciliated cell | 5 studies | 26% ± 10% | |
endothelial cell of lymphatic vessel | 5 studies | 23% ± 5% | |
type II pneumocyte | 5 studies | 21% ± 6% | |
naive B cell | 5 studies | 17% ± 2% | |
squamous epithelial cell | 4 studies | 45% ± 20% | |
glutamatergic neuron | 4 studies | 33% ± 10% | |
oligodendrocyte precursor cell | 4 studies | 30% ± 8% | |
club cell | 4 studies | 28% ± 10% | |
pericyte | 3 studies | 20% ± 2% | |
hepatocyte | 3 studies | 41% ± 16% | |
GABAergic neuron | 3 studies | 38% ± 5% | |
neural progenitor cell | 3 studies | 21% ± 2% | |
ependymal cell | 3 studies | 31% ± 8% | |
type I pneumocyte | 3 studies | 28% ± 8% | |
goblet cell | 3 studies | 37% ± 22% | |
adipocyte | 3 studies | 22% ± 0% | |
neuron | 3 studies | 42% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2466.67 | 1444 / 1445 | 100% | 11.45 | 183 / 183 |
ovary | 100% | 1377.99 | 180 / 180 | 100% | 8.23 | 429 / 430 |
lung | 100% | 1695.43 | 578 / 578 | 100% | 8.18 | 1152 / 1155 |
stomach | 100% | 882.50 | 359 / 359 | 100% | 9.99 | 285 / 286 |
intestine | 100% | 1222.08 | 966 / 966 | 99% | 9.65 | 523 / 527 |
bladder | 100% | 1130.86 | 21 / 21 | 99% | 9.03 | 498 / 504 |
brain | 99% | 817.42 | 2604 / 2642 | 100% | 6.64 | 705 / 705 |
breast | 100% | 1439.61 | 459 / 459 | 98% | 8.57 | 1092 / 1118 |
thymus | 100% | 1055.39 | 652 / 653 | 97% | 6.44 | 589 / 605 |
uterus | 100% | 1087.80 | 170 / 170 | 97% | 7.69 | 445 / 459 |
skin | 100% | 1880.74 | 1809 / 1809 | 97% | 11.04 | 456 / 472 |
prostate | 100% | 1016.75 | 245 / 245 | 96% | 5.98 | 484 / 502 |
pancreas | 93% | 544.43 | 306 / 328 | 98% | 6.92 | 175 / 178 |
liver | 100% | 1200.40 | 226 / 226 | 88% | 4.66 | 359 / 406 |
kidney | 100% | 826.52 | 89 / 89 | 86% | 4.29 | 779 / 901 |
adrenal gland | 100% | 1540.49 | 258 / 258 | 71% | 2.72 | 164 / 230 |
adipose | 100% | 1362.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 2350.75 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.88 | 1 / 1 |
blood vessel | 100% | 1051.65 | 1332 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.19 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 9.79 | 28 / 29 |
heart | 89% | 603.64 | 764 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 66% | 3.05 | 53 / 80 |
peripheral blood | 54% | 967.11 | 505 / 929 | 0% | 0 | 0 / 0 |
muscle | 46% | 215.18 | 371 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1903358 | Biological process | regulation of Golgi organization |
GO_0007030 | Biological process | Golgi organization |
GO_0048227 | Biological process | plasma membrane to endosome transport |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0043547 | Biological process | positive regulation of GTPase activity |
GO_0019068 | Biological process | virion assembly |
GO_0090630 | Biological process | activation of GTPase activity |
GO_0035526 | Biological process | retrograde transport, plasma membrane to Golgi |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | USP6NL |
Protein name | USP6 N-terminal like USP6 N-terminal-like protein (Related to the N-terminus of tre) (RN-tre) USP6NL protein |
Synonyms | KIAA0019 |
Description | FUNCTION: Acts as a GTPase-activating protein for RAB5A and RAB43. Involved in receptor trafficking. In complex with EPS8 inhibits internalization of EGFR. Involved in retrograde transport from the endocytic pathway to the Golgi apparatus. Involved in the transport of Shiga toxin from early and recycling endosomes to the trans-Golgi network. Required for structural integrity of the Golgi complex. . |
Accessions | Q92738 ENST00000379237.6 ENST00000277575.5 [Q92738-2] ENST00000609853.1 V9GYH2 ENST00000609104.6 [Q92738-1] X6RAB3 Q96FW8 |