Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 20% ± 5% | |
microglial cell | 5 studies | 19% ± 4% | |
macrophage | 5 studies | 21% ± 2% | |
epithelial cell | 4 studies | 25% ± 2% | |
GABAergic neuron | 4 studies | 34% ± 12% | |
astrocyte | 4 studies | 26% ± 5% | |
glutamatergic neuron | 4 studies | 44% ± 14% | |
oligodendrocyte | 4 studies | 20% ± 3% | |
neuron | 3 studies | 24% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 35% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1411.55 | 1445 / 1445 | 100% | 23.65 | 183 / 183 |
breast | 100% | 1477.59 | 459 / 459 | 100% | 35.45 | 1117 / 1118 |
thymus | 100% | 2033.95 | 653 / 653 | 100% | 36.32 | 604 / 605 |
prostate | 100% | 1273.15 | 245 / 245 | 100% | 25.91 | 501 / 502 |
skin | 100% | 1649.64 | 1809 / 1809 | 100% | 29.90 | 471 / 472 |
kidney | 100% | 1683.92 | 89 / 89 | 100% | 28.75 | 899 / 901 |
pancreas | 100% | 768.42 | 327 / 328 | 100% | 29.42 | 178 / 178 |
lung | 100% | 1345.14 | 577 / 578 | 100% | 28.06 | 1153 / 1155 |
uterus | 100% | 1395.45 | 170 / 170 | 100% | 31.63 | 457 / 459 |
bladder | 100% | 1471.76 | 21 / 21 | 99% | 28.90 | 501 / 504 |
ovary | 100% | 1325.14 | 180 / 180 | 99% | 18.21 | 427 / 430 |
liver | 100% | 614.36 | 226 / 226 | 99% | 16.82 | 403 / 406 |
stomach | 100% | 1086.20 | 359 / 359 | 99% | 21.54 | 283 / 286 |
intestine | 100% | 1473.67 | 966 / 966 | 99% | 22.81 | 521 / 527 |
adrenal gland | 100% | 1138.78 | 258 / 258 | 95% | 20.07 | 219 / 230 |
brain | 100% | 783.00 | 2631 / 2642 | 89% | 14.92 | 625 / 705 |
adipose | 100% | 1494.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1527.41 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 31.30 | 29 / 29 |
spleen | 100% | 1605.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.60 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.21 | 1 / 1 |
heart | 99% | 857.66 | 853 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 540.84 | 783 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1193.61 | 898 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 17.59 | 76 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1990116 | Biological process | ribosome-associated ubiquitin-dependent protein catabolic process |
GO_0072344 | Biological process | rescue of stalled ribosome |
GO_0032790 | Biological process | ribosome disassembly |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0045661 | Biological process | regulation of myoblast differentiation |
GO_0030520 | Biological process | estrogen receptor signaling pathway |
GO_0031594 | Cellular component | neuromuscular junction |
GO_0005813 | Cellular component | centrosome |
GO_0180022 | Cellular component | RQC-trigger complex |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0099053 | Cellular component | activating signal cointegrator 1 complex |
GO_0016604 | Cellular component | nuclear body |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0016922 | Molecular function | nuclear receptor binding |
GO_0019901 | Molecular function | protein kinase binding |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0002020 | Molecular function | protease binding |
GO_0035035 | Molecular function | histone acetyltransferase binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
GO_0044389 | Molecular function | ubiquitin-like protein ligase binding |
Gene name | TRIP4 |
Protein name | Activating signal cointegrator 1 (ASC-1) (Thyroid receptor-interacting protein 4) (TR-interacting protein 4) (TRIP-4) Thyroid hormone receptor interactor 4 |
Synonyms | RQT4 |
Description | FUNCTION: Transcription coactivator which associates with nuclear receptors, transcriptional coactivators including EP300, CREBBP and NCOA1, and basal transcription factors like TBP and TFIIA to facilitate nuclear receptors-mediated transcription . May thereby play an important role in establishing distinct coactivator complexes under different cellular conditions . Plays a role in thyroid hormone receptor and estrogen receptor transactivation . Also involved in androgen receptor transactivation (By similarity). Plays a pivotal role in the transactivation of NF-kappa-B, SRF and AP1 . Acts as a mediator of transrepression between nuclear receptor and either AP1 or NF-kappa-B . May play a role in the development of neuromuscular junction . May play a role in late myogenic differentiation (By similarity). Also functions as part of the RQC trigger (RQT) complex that activates the ribosome quality control (RQC) pathway, a pathway that degrades nascent peptide chains during problematic translation . . |
Accessions | ENST00000558162.1 ENST00000560567.5 ENST00000560920.6 H3BMU9 ENST00000558820.5 H0YLN7 Q15650 ENST00000560475.1 ENST00000261884.8 H0YK63 H0YKD9 H0YL91 |