Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 28% ± 10% | |
microglial cell | 10 studies | 28% ± 11% | |
oligodendrocyte | 10 studies | 28% ± 11% | |
oligodendrocyte precursor cell | 8 studies | 28% ± 13% | |
astrocyte | 8 studies | 32% ± 15% | |
glutamatergic neuron | 7 studies | 43% ± 26% | |
epithelial cell | 6 studies | 29% ± 14% | |
fibroblast | 6 studies | 21% ± 6% | |
GABAergic neuron | 6 studies | 43% ± 21% | |
interneuron | 5 studies | 42% ± 24% | |
adipocyte | 5 studies | 24% ± 3% | |
dendritic cell | 5 studies | 16% ± 0% | |
ciliated cell | 5 studies | 26% ± 6% | |
macrophage | 5 studies | 36% ± 6% | |
neuron | 4 studies | 28% ± 12% | |
myeloid cell | 4 studies | 21% ± 6% | |
retinal cone cell | 4 studies | 26% ± 13% | |
endothelial cell of lymphatic vessel | 4 studies | 25% ± 4% | |
pericyte | 4 studies | 21% ± 7% | |
GABAergic interneuron | 3 studies | 20% ± 4% | |
retinal rod cell | 3 studies | 28% ± 6% | |
hepatocyte | 3 studies | 42% ± 19% | |
alveolar macrophage | 3 studies | 26% ± 10% | |
lymphocyte | 3 studies | 24% ± 6% | |
smooth muscle cell | 3 studies | 18% ± 1% | |
granule cell | 3 studies | 19% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2875.77 | 1445 / 1445 | 100% | 21.39 | 183 / 183 |
lung | 100% | 2733.80 | 578 / 578 | 100% | 17.23 | 1154 / 1155 |
breast | 100% | 3114.91 | 459 / 459 | 99% | 22.17 | 1109 / 1118 |
brain | 99% | 2295.98 | 2620 / 2642 | 100% | 17.04 | 703 / 705 |
thymus | 100% | 2931.76 | 653 / 653 | 99% | 18.74 | 598 / 605 |
prostate | 100% | 2475.76 | 245 / 245 | 99% | 16.93 | 496 / 502 |
ovary | 100% | 2319.22 | 180 / 180 | 98% | 10.98 | 423 / 430 |
stomach | 100% | 2325.43 | 359 / 359 | 98% | 14.23 | 281 / 286 |
bladder | 100% | 2673.52 | 21 / 21 | 98% | 13.52 | 494 / 504 |
intestine | 100% | 3055.91 | 966 / 966 | 98% | 12.85 | 515 / 527 |
pancreas | 99% | 1411.63 | 326 / 328 | 98% | 12.70 | 175 / 178 |
kidney | 100% | 2063.35 | 89 / 89 | 98% | 15.54 | 880 / 901 |
uterus | 100% | 2827.20 | 170 / 170 | 97% | 14.23 | 447 / 459 |
adrenal gland | 100% | 2669.27 | 258 / 258 | 94% | 12.53 | 217 / 230 |
skin | 100% | 3852.11 | 1809 / 1809 | 93% | 17.02 | 441 / 472 |
liver | 100% | 2312.74 | 226 / 226 | 92% | 10.45 | 375 / 406 |
blood vessel | 100% | 2555.73 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2794.61 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3052.17 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.11 | 1 / 1 |
adipose | 100% | 3017.00 | 1203 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 16.21 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 17.07 | 28 / 29 |
heart | 95% | 1743.00 | 822 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 2184.41 | 841 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 70% | 7.35 | 56 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007030 | Biological process | Golgi organization |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0048208 | Biological process | COPII vesicle coating |
GO_0099022 | Biological process | vesicle tethering |
GO_0030008 | Cellular component | TRAPP complex |
GO_0005829 | Cellular component | cytosol |
GO_1990072 | Cellular component | TRAPPIII protein complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | TRAPPC8 |
Protein name | Trafficking protein particle complex subunit 8 Trafficking protein particle complex subunit 8 (Protein TRS85 homolog) |
Synonyms | KIAA1012 |
Description | FUNCTION: Plays a role in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage . Maintains together with TBC1D14 the cycling pool of ATG9 required for initiation of autophagy . . |
Accessions | J3QSA1 J3QQJ5 J3QQS5 J3QR00 ENST00000581057.2 Q9Y2L5 ENST00000580104.5 J3KSL8 ENST00000578658.1 ENST00000582513.5 ENST00000582539.5 ENST00000283351.10 [Q9Y2L5-1] |