Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 14 studies | 34% ± 13% | |
oligodendrocyte | 14 studies | 34% ± 15% | |
glutamatergic neuron | 10 studies | 40% ± 25% | |
endothelial cell | 9 studies | 24% ± 6% | |
astrocyte | 9 studies | 33% ± 14% | |
oligodendrocyte precursor cell | 8 studies | 34% ± 14% | |
GABAergic neuron | 7 studies | 42% ± 19% | |
retinal cone cell | 6 studies | 31% ± 5% | |
retinal rod cell | 6 studies | 25% ± 6% | |
fibroblast | 6 studies | 20% ± 3% | |
macrophage | 6 studies | 22% ± 4% | |
epithelial cell | 5 studies | 29% ± 3% | |
endothelial cell of lymphatic vessel | 5 studies | 22% ± 2% | |
interneuron | 5 studies | 42% ± 22% | |
neuron | 4 studies | 34% ± 13% | |
retina horizontal cell | 4 studies | 18% ± 4% | |
retinal bipolar neuron | 4 studies | 17% ± 1% | |
adipocyte | 4 studies | 19% ± 4% | |
cardiac muscle cell | 4 studies | 23% ± 2% | |
microglial cell | 4 studies | 21% ± 4% | |
smooth muscle cell | 4 studies | 18% ± 1% | |
precursor B cell | 3 studies | 18% ± 1% | |
glycinergic amacrine cell | 3 studies | 20% ± 1% | |
amacrine cell | 3 studies | 18% ± 3% | |
ependymal cell | 3 studies | 37% ± 10% | |
pericyte | 3 studies | 18% ± 3% | |
granule cell | 3 studies | 24% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1737.95 | 2639 / 2642 | 99% | 8.73 | 699 / 705 |
esophagus | 100% | 1034.42 | 1445 / 1445 | 99% | 8.44 | 181 / 183 |
thymus | 100% | 1915.61 | 653 / 653 | 98% | 8.56 | 593 / 605 |
breast | 100% | 1319.74 | 459 / 459 | 97% | 10.04 | 1087 / 1118 |
ovary | 100% | 1660.84 | 180 / 180 | 97% | 5.84 | 418 / 430 |
prostate | 100% | 1274.38 | 245 / 245 | 97% | 6.58 | 485 / 502 |
lung | 99% | 1004.03 | 574 / 578 | 96% | 5.69 | 1110 / 1155 |
pancreas | 100% | 779.16 | 327 / 328 | 96% | 5.73 | 170 / 178 |
adrenal gland | 100% | 1282.93 | 258 / 258 | 93% | 7.03 | 215 / 230 |
kidney | 100% | 1041.34 | 89 / 89 | 93% | 6.37 | 834 / 901 |
uterus | 100% | 1513.22 | 170 / 170 | 88% | 4.41 | 402 / 459 |
skin | 100% | 1275.12 | 1806 / 1809 | 87% | 5.98 | 411 / 472 |
bladder | 100% | 1290.95 | 21 / 21 | 86% | 3.94 | 431 / 504 |
stomach | 99% | 854.60 | 357 / 359 | 85% | 4.42 | 242 / 286 |
intestine | 100% | 1191.36 | 966 / 966 | 77% | 3.55 | 406 / 527 |
liver | 100% | 487.17 | 225 / 226 | 50% | 1.88 | 204 / 406 |
adipose | 100% | 1228.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 957.44 | 241 / 241 | 0% | 0 | 0 / 0 |
muscle | 100% | 1068.93 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1030.30 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 866.55 | 823 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 4.61 | 37 / 45 |
lymph node | 0% | 0 | 0 / 0 | 69% | 3.07 | 20 / 29 |
eye | 0% | 0 | 0 / 0 | 64% | 3.19 | 51 / 80 |
peripheral blood | 28% | 361.89 | 263 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0031116 | Biological process | positive regulation of microtubule polymerization |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0035082 | Biological process | axoneme assembly |
GO_0005930 | Cellular component | axoneme |
GO_0005929 | Cellular component | cilium |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0005874 | Cellular component | microtubule |
GO_0008017 | Molecular function | microtubule binding |
GO_0005515 | Molecular function | protein binding |
Gene name | TOGARAM1 |
Protein name | TOG array regulator of axonemal microtubules protein 1 (Crescerin-1) (Protein FAM179B) FAM179B protein KIAA0423, isoform CRA_a (TOG array regulator of axonemal microtubules 1) Alternative protein FAM179B TOG array regulator of axonemal microtubules 1 |
Synonyms | FAM179B KIAA0423 hCG_20876 |
Description | FUNCTION: Involved in ciliogenesis . It is required for appropriate acetylation and polyglutamylation of ciliary microtubules, and regulation of cilium length . Interacts with microtubules and promotes microtubule polymerization via its HEAT repeat domains, especially those in TOG region 2 and 4 (By similarity). . |
Accessions | L0R5A8 ENST00000361577.7 [Q9Y4F4-1] H0YJ89 ENST00000556823.1 Q9Y4F4 G3XAE9 H0YIY7 Q6P183 ENST00000557250.1 ENST00000557423.5 [Q9Y4F4-3] ENST00000555874.5 ENST00000361462.7 G3V3B1 |