TIGD4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal rod cell	4 studies	20% ± 5%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	98%	45.64	2599 / 2642	91%	2.72	645 / 705
thymus	100%	50.33	650 / 653	65%	1.26	393 / 605
ovary	98%	40.16	177 / 180	65%	1.45	279 / 430
intestine	96%	23.32	923 / 966	51%	0.93	268 / 527
kidney	97%	37.96	86 / 89	48%	0.90	430 / 901
adrenal gland	90%	18.84	233 / 258	49%	1.03	113 / 230
prostate	99%	34.54	243 / 245	39%	0.55	195 / 502
breast	88%	22.87	403 / 459	48%	0.87	535 / 1118
skin	73%	11.63	1325 / 1809	58%	1.37	276 / 472
stomach	83%	15.97	298 / 359	45%	0.87	129 / 286
uterus	99%	44.88	169 / 170	23%	0.46	104 / 459
bladder	95%	26.38	20 / 21	24%	0.49	122 / 504
esophagus	81%	16.97	1175 / 1445	34%	0.73	63 / 183
pancreas	80%	13.39	263 / 328	34%	0.58	61 / 178
lung	85%	28.35	489 / 578	27%	0.46	310 / 1155
spleen	85%	14.15	205 / 241	0%	0	0 / 0
blood vessel	83%	15.00	1108 / 1335	0%	0	0 / 0
heart	76%	12.22	651 / 861	0%	0	0 / 0
adipose	71%	10.69	850 / 1204	0%	0	0 / 0
muscle	61%	14.75	487 / 803	0%	0	0 / 0
liver	37%	4.59	84 / 226	1%	0.01	5 / 406
peripheral blood	25%	9.49	230 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	15%	0.25	12 / 80
tonsil	0%	0	0 / 0	7%	0.10	3 / 45
lymph node	0%	0	0 / 0	3%	0.04	1 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1