Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 7 studies | 36% ± 8% | |
dendritic cell | 4 studies | 42% ± 22% | |
conventional dendritic cell | 4 studies | 29% ± 15% | |
myeloid cell | 4 studies | 25% ± 9% | |
epithelial cell | 4 studies | 28% ± 8% | |
non-classical monocyte | 3 studies | 26% ± 8% | |
endothelial cell | 3 studies | 21% ± 2% | |
memory B cell | 3 studies | 21% ± 5% | |
naive B cell | 3 studies | 19% ± 3% | |
natural killer cell | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3906.90 | 1445 / 1445 | 100% | 29.88 | 183 / 183 |
skin | 100% | 4440.26 | 1809 / 1809 | 100% | 30.71 | 472 / 472 |
thymus | 100% | 3215.06 | 653 / 653 | 100% | 15.06 | 605 / 605 |
uterus | 100% | 4153.71 | 170 / 170 | 100% | 29.91 | 459 / 459 |
intestine | 100% | 3993.18 | 966 / 966 | 100% | 26.61 | 526 / 527 |
bladder | 100% | 4609.33 | 21 / 21 | 100% | 23.38 | 502 / 504 |
prostate | 100% | 3804.69 | 245 / 245 | 100% | 15.53 | 500 / 502 |
ovary | 100% | 3516.68 | 180 / 180 | 100% | 19.38 | 428 / 430 |
stomach | 100% | 2623.95 | 359 / 359 | 99% | 26.15 | 284 / 286 |
breast | 100% | 3401.81 | 459 / 459 | 99% | 18.77 | 1109 / 1118 |
lung | 100% | 3077.66 | 578 / 578 | 99% | 20.09 | 1138 / 1155 |
brain | 100% | 2420.05 | 2631 / 2642 | 99% | 12.18 | 696 / 705 |
pancreas | 100% | 1866.42 | 327 / 328 | 98% | 15.03 | 175 / 178 |
kidney | 100% | 2354.87 | 89 / 89 | 97% | 12.71 | 876 / 901 |
adrenal gland | 100% | 2341.56 | 258 / 258 | 97% | 13.34 | 223 / 230 |
liver | 100% | 1108.13 | 225 / 226 | 89% | 9.92 | 363 / 406 |
adipose | 100% | 3081.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3326.03 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 20.83 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.47 | 29 / 29 |
muscle | 100% | 2843.02 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4419.78 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.61 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.20 | 1 / 1 |
heart | 98% | 1885.61 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 2636.77 | 793 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0014029 | Biological process | neural crest formation |
GO_0001501 | Biological process | skeletal system development |
GO_0042790 | Biological process | nucleolar large rRNA transcription by RNA polymerase I |
GO_0014032 | Biological process | neural crest cell development |
GO_0006417 | Biological process | regulation of translation |
GO_0005730 | Cellular component | nucleolus |
GO_0001650 | Cellular component | fibrillar center |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0097110 | Molecular function | scaffold protein binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | TCOF1 |
Protein name | Treacle ribosome biogenesis factor 1 Treacle protein (Treacher Collins syndrome protein) |
Synonyms | |
Description | FUNCTION: Nucleolar protein that acts as a regulator of RNA polymerase I by connecting RNA polymerase I with enzymes responsible for ribosomal processing and modification . Required for neural crest specification: following monoubiquitination by the BCR(KBTBD8) complex, associates with NOLC1 and acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification . . |
Accessions | A0A6I8PRA0 A0A3B3IS06 H0Y8Y7 H0YA99 ENST00000439160.6 [Q13428-7] A0A2R8Y857 ENST00000513346.5 ENST00000643257.2 [Q13428-3] ENST00000643812.1 ENST00000427724.7 [Q13428-6] ENST00000504761.6 [Q13428-1] ENST00000323668.11 [Q13428-2] ENST00000377797.7 [Q13428-1] ENST00000506767.1 ENST00000650162.1 ENST00000646961.1 ENST00000674413.1 A0A2R8Y4M7 H0YAB7 E7ETY2 ENST00000515516.1 Q13428 ENST00000394269.7 [Q13428-5] ENST00000445265.6 [Q13428-8] ENST00000513538.2 |