Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 30% ± 11% | |
non-classical monocyte | 12 studies | 30% ± 13% | |
ciliated cell | 11 studies | 49% ± 16% | |
macrophage | 11 studies | 27% ± 12% | |
dendritic cell | 8 studies | 31% ± 14% | |
plasmacytoid dendritic cell | 6 studies | 24% ± 5% | |
myeloid cell | 6 studies | 33% ± 21% | |
endothelial cell of lymphatic vessel | 6 studies | 36% ± 13% | |
GABAergic neuron | 6 studies | 42% ± 19% | |
glutamatergic neuron | 5 studies | 52% ± 18% | |
cardiac muscle cell | 5 studies | 44% ± 11% | |
astrocyte | 5 studies | 33% ± 11% | |
microglial cell | 5 studies | 26% ± 8% | |
club cell | 5 studies | 30% ± 13% | |
monocyte | 5 studies | 34% ± 9% | |
cholangiocyte | 4 studies | 58% ± 19% | |
fibroblast | 4 studies | 21% ± 2% | |
basal cell | 4 studies | 22% ± 4% | |
endothelial cell of vascular tree | 4 studies | 27% ± 10% | |
interneuron | 4 studies | 47% ± 20% | |
epithelial cell | 3 studies | 25% ± 6% | |
hepatocyte | 3 studies | 59% ± 23% | |
oligodendrocyte precursor cell | 3 studies | 31% ± 9% | |
capillary endothelial cell | 3 studies | 21% ± 4% | |
alveolar macrophage | 3 studies | 29% ± 4% | |
respiratory goblet cell | 3 studies | 36% ± 15% | |
type II pneumocyte | 3 studies | 19% ± 1% | |
neuron | 3 studies | 47% ± 19% | |
oligodendrocyte | 3 studies | 29% ± 8% | |
mucus secreting cell | 3 studies | 35% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 9492.08 | 245 / 245 | 100% | 43.46 | 502 / 502 |
esophagus | 100% | 2266.59 | 1440 / 1445 | 99% | 25.30 | 181 / 183 |
pancreas | 100% | 3888.75 | 328 / 328 | 98% | 25.40 | 175 / 178 |
breast | 100% | 3665.41 | 458 / 459 | 98% | 27.81 | 1098 / 1118 |
lung | 100% | 4731.05 | 576 / 578 | 97% | 21.60 | 1118 / 1155 |
uterus | 100% | 2632.99 | 170 / 170 | 96% | 25.13 | 442 / 459 |
ovary | 100% | 1667.98 | 180 / 180 | 96% | 17.25 | 413 / 430 |
stomach | 100% | 4102.09 | 359 / 359 | 94% | 12.61 | 270 / 286 |
bladder | 100% | 2627.90 | 21 / 21 | 94% | 21.31 | 472 / 504 |
liver | 100% | 2616.47 | 225 / 226 | 94% | 20.06 | 381 / 406 |
kidney | 100% | 3001.63 | 89 / 89 | 92% | 18.78 | 831 / 901 |
intestine | 97% | 2319.65 | 940 / 966 | 94% | 12.91 | 495 / 527 |
skin | 100% | 4396.19 | 1804 / 1809 | 79% | 10.83 | 373 / 472 |
adrenal gland | 82% | 974.83 | 211 / 258 | 90% | 19.35 | 206 / 230 |
thymus | 100% | 2135.61 | 650 / 653 | 55% | 4.34 | 331 / 605 |
brain | 57% | 681.33 | 1498 / 2642 | 83% | 8.23 | 587 / 705 |
muscle | 100% | 9659.53 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2947.43 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.97 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.86 | 1 / 1 |
adipose | 100% | 2972.90 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 2192.87 | 1315 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 3217.10 | 828 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 1897.78 | 657 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 59% | 6.86 | 17 / 29 |
eye | 0% | 0 | 0 / 0 | 43% | 5.02 | 34 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0008015 | Biological process | blood circulation |
GO_0090630 | Biological process | activation of GTPase activity |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | TBC1D8 |
Protein name | TBC1 domain family member 8 (AD 3) (Vascular Rab-GAP/TBC-containing protein) TBC1 domain family member 8 |
Synonyms | VRP |
Description | FUNCTION: May act as a GTPase-activating protein for Rab family protein(s). |
Accessions | ENST00000376840.8 [O95759-1] J3KQ40 O95759 ENST00000409318.2 |