Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 13 studies | 39% ± 20% | |
oligodendrocyte precursor cell | 11 studies | 37% ± 18% | |
microglial cell | 9 studies | 32% ± 12% | |
GABAergic neuron | 6 studies | 26% ± 9% | |
type I pneumocyte | 5 studies | 32% ± 5% | |
epithelial cell | 4 studies | 25% ± 11% | |
ciliated cell | 4 studies | 37% ± 8% | |
hepatocyte | 3 studies | 22% ± 6% | |
glutamatergic neuron | 3 studies | 33% ± 9% | |
ependymal cell | 3 studies | 37% ± 21% | |
interneuron | 3 studies | 43% ± 16% | |
renal alpha-intercalated cell | 3 studies | 29% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 29% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 98% | 1481.12 | 240 / 245 | 100% | 12.72 | 501 / 502 |
brain | 92% | 1776.56 | 2420 / 2642 | 100% | 16.74 | 704 / 705 |
thymus | 100% | 1097.13 | 651 / 653 | 86% | 4.90 | 523 / 605 |
lung | 100% | 1160.51 | 577 / 578 | 74% | 4.45 | 860 / 1155 |
liver | 100% | 1379.28 | 226 / 226 | 72% | 4.42 | 292 / 406 |
breast | 80% | 595.58 | 366 / 459 | 71% | 7.47 | 798 / 1118 |
pancreas | 65% | 216.15 | 213 / 328 | 83% | 4.58 | 147 / 178 |
esophagus | 93% | 509.56 | 1343 / 1445 | 47% | 2.04 | 86 / 183 |
kidney | 98% | 767.91 | 87 / 89 | 35% | 3.91 | 318 / 901 |
stomach | 97% | 727.40 | 347 / 359 | 28% | 1.03 | 79 / 286 |
bladder | 62% | 498.19 | 13 / 21 | 61% | 3.80 | 306 / 504 |
ureter | 0% | 0 | 0 / 0 | 100% | 21.18 | 1 / 1 |
adrenal gland | 39% | 149.08 | 101 / 258 | 57% | 5.76 | 131 / 230 |
intestine | 60% | 245.70 | 582 / 966 | 34% | 1.38 | 180 / 527 |
uterus | 22% | 69.21 | 38 / 170 | 67% | 3.96 | 308 / 459 |
ovary | 4% | 9.53 | 7 / 180 | 84% | 4.86 | 360 / 430 |
skin | 70% | 507.03 | 1267 / 1809 | 13% | 0.64 | 62 / 472 |
lymph node | 0% | 0 | 0 / 0 | 72% | 10.57 | 21 / 29 |
adipose | 60% | 351.75 | 725 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 47% | 1.55 | 21 / 45 |
blood vessel | 28% | 76.18 | 369 / 1335 | 0% | 0 | 0 / 0 |
heart | 25% | 73.92 | 214 / 861 | 0% | 0 | 0 / 0 |
spleen | 15% | 39.39 | 35 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 14% | 61.62 | 133 / 929 | 0% | 0 | 0 / 0 |
muscle | 0% | 0.23 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0017156 | Biological process | calcium-ion regulated exocytosis |
GO_1903861 | Biological process | positive regulation of dendrite extension |
GO_0030154 | Biological process | cell differentiation |
GO_0099149 | Biological process | regulation of postsynaptic neurotransmitter receptor internalization |
GO_0070382 | Cellular component | exocytic vesicle |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098794 | Cellular component | postsynapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0030276 | Molecular function | clathrin binding |
GO_0000149 | Molecular function | SNARE binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005544 | Molecular function | calcium-dependent phospholipid binding |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SYT17 |
Protein name | Synaptotagmin 17 Synaptotagmin-17 (Protein B/K) (Synaptotagmin XVII) (SytXVII) Synaptotagmin-17 (Synaptotagmin XVII) |
Synonyms | hCG_38025 |
Description | FUNCTION: Plays a role in dendrite formation by melanocytes . . |
Accessions | H3BQZ6 ENST00000562711.6 ENST00000570264.5 H3BSP0 H3BN78 ENST00000566261.5 ENST00000568115.5 H3BSX1 H3BRH9 ENST00000355377.7 ENST00000565183.5 ENST00000568433.1 Q9BSW7 H3BSU5 ENST00000562034.5 H3BMD4 |