Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 4 studies | 31% ± 16% | |
astrocyte | 4 studies | 35% ± 14% | |
oligodendrocyte precursor cell | 4 studies | 22% ± 5% | |
glutamatergic neuron | 3 studies | 50% ± 17% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 35% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1328.19 | 459 / 459 | 94% | 24.42 | 1046 / 1118 |
uterus | 100% | 288.56 | 170 / 170 | 70% | 26.00 | 322 / 459 |
prostate | 100% | 658.28 | 245 / 245 | 55% | 2.24 | 278 / 502 |
brain | 99% | 353.03 | 2620 / 2642 | 55% | 2.25 | 386 / 705 |
esophagus | 95% | 207.04 | 1370 / 1445 | 48% | 5.26 | 88 / 183 |
skin | 91% | 293.27 | 1640 / 1809 | 47% | 2.99 | 222 / 472 |
lung | 100% | 447.25 | 576 / 578 | 35% | 3.25 | 405 / 1155 |
pancreas | 100% | 537.70 | 327 / 328 | 29% | 1.55 | 52 / 178 |
bladder | 100% | 322.48 | 21 / 21 | 29% | 2.46 | 145 / 504 |
kidney | 100% | 444.46 | 89 / 89 | 24% | 1.04 | 212 / 901 |
thymus | 100% | 539.37 | 653 / 653 | 16% | 0.66 | 96 / 605 |
stomach | 99% | 541.04 | 357 / 359 | 16% | 1.15 | 46 / 286 |
ovary | 86% | 139.79 | 155 / 180 | 26% | 1.40 | 112 / 430 |
intestine | 99% | 296.52 | 955 / 966 | 12% | 1.01 | 63 / 527 |
spleen | 100% | 529.83 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.65 | 1 / 1 |
adipose | 100% | 391.65 | 1203 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 78% | 123.80 | 202 / 258 | 21% | 0.95 | 49 / 230 |
heart | 97% | 214.70 | 837 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 229.18 | 1288 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 28.79 | 38 / 45 |
muscle | 61% | 81.21 | 486 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 59% | 205.84 | 551 / 929 | 0% | 0 | 0 / 0 |
liver | 20% | 25.09 | 46 / 226 | 3% | 0.16 | 11 / 406 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.65 | 4 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.03 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006915 | Biological process | apoptotic process |
GO_0048808 | Biological process | male genitalia morphogenesis |
GO_0009566 | Biological process | fertilization |
GO_0007130 | Biological process | synaptonemal complex assembly |
GO_0051301 | Biological process | cell division |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0051093 | Biological process | negative regulation of developmental process |
GO_0007143 | Biological process | female meiotic nuclear division |
GO_0000080 | Biological process | mitotic G1 phase |
GO_0007140 | Biological process | male meiotic nuclear division |
GO_0035234 | Biological process | ectopic germ cell programmed cell death |
GO_2000242 | Biological process | negative regulation of reproductive process |
GO_0000800 | Cellular component | lateral element |
GO_0000779 | Cellular component | condensed chromosome, centromeric region |
GO_0000795 | Cellular component | synaptonemal complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
Gene name | SYCP2 |
Protein name | SYCP2 protein Synaptonemal complex protein 2 (SCP-2) (Synaptonemal complex lateral element protein) (hsSCP2) Synaptonemal complex protein 2 |
Synonyms | SCP2 |
Description | FUNCTION: Major component of the axial/lateral elements of synaptonemal complexes (SCS) during meiotic prophase. Plays a role in the assembly of synaptonemal complexes. Required for normal meiotic chromosome synapsis during oocyte and spermatocyte development and for normal male and female fertility. Required for insertion of SYCP3 into synaptonemal complexes. May be involved in the organization of chromatin by temporarily binding to DNA scaffold attachment regions. Requires SYCP3, but not SYCP1, in order to be incorporated into the axial/lateral elements. . |
Accessions | Q9BX26 ENST00000446834.5 A2A340 Q8IWA1 A2A2M9 ENST00000412613.1 A6QL60 ENST00000371001.6 ENST00000425931.1 ENST00000357552.8 A2A341 |