Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 29% ± 13% | |
macrophage | 7 studies | 23% ± 6% | |
interneuron | 6 studies | 30% ± 19% | |
astrocyte | 6 studies | 29% ± 10% | |
oligodendrocyte | 6 studies | 25% ± 7% | |
microglial cell | 5 studies | 23% ± 5% | |
oligodendrocyte precursor cell | 5 studies | 29% ± 10% | |
epithelial cell | 5 studies | 37% ± 12% | |
neuron | 4 studies | 29% ± 8% | |
ciliated cell | 4 studies | 33% ± 10% | |
fibroblast | 4 studies | 21% ± 6% | |
GABAergic neuron | 4 studies | 43% ± 13% | |
glutamatergic neuron | 4 studies | 51% ± 15% | |
endothelial cell of lymphatic vessel | 4 studies | 16% ± 1% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 3% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 17% ± 1% | |
type I pneumocyte | 3 studies | 21% ± 5% | |
basal cell | 3 studies | 34% ± 11% | |
goblet cell | 3 studies | 25% ± 10% | |
pericyte | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2572.25 | 1445 / 1445 | 100% | 14.18 | 183 / 183 |
stomach | 100% | 2080.61 | 359 / 359 | 100% | 14.23 | 286 / 286 |
ovary | 100% | 3721.72 | 180 / 180 | 100% | 12.39 | 429 / 430 |
intestine | 100% | 2991.73 | 966 / 966 | 99% | 14.01 | 524 / 527 |
lung | 100% | 2590.26 | 577 / 578 | 100% | 11.63 | 1150 / 1155 |
breast | 100% | 2661.76 | 459 / 459 | 99% | 15.26 | 1109 / 1118 |
bladder | 100% | 2913.86 | 21 / 21 | 99% | 13.50 | 497 / 504 |
thymus | 100% | 3175.31 | 653 / 653 | 98% | 13.50 | 595 / 605 |
brain | 99% | 1756.52 | 2620 / 2642 | 99% | 12.90 | 698 / 705 |
pancreas | 100% | 1555.98 | 327 / 328 | 98% | 11.62 | 174 / 178 |
prostate | 100% | 3081.56 | 245 / 245 | 97% | 10.32 | 487 / 502 |
uterus | 100% | 3590.92 | 170 / 170 | 96% | 12.00 | 442 / 459 |
kidney | 100% | 2236.17 | 89 / 89 | 95% | 10.18 | 858 / 901 |
skin | 100% | 2627.85 | 1809 / 1809 | 95% | 12.99 | 447 / 472 |
adrenal gland | 100% | 2379.49 | 258 / 258 | 94% | 8.58 | 216 / 230 |
liver | 100% | 1060.55 | 225 / 226 | 57% | 3.52 | 232 / 406 |
adipose | 100% | 2329.60 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 3256.57 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.58 | 1 / 1 |
blood vessel | 100% | 2586.84 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1531.08 | 799 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3054.34 | 919 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 1447.75 | 841 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 8.61 | 43 / 45 |
lymph node | 0% | 0 | 0 / 0 | 93% | 10.11 | 27 / 29 |
eye | 0% | 0 | 0 / 0 | 76% | 6.51 | 61 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0006914 | Biological process | autophagy |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0007369 | Biological process | gastrulation |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000124 | Cellular component | SAGA complex |
GO_0070461 | Cellular component | SAGA-type complex |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003712 | Molecular function | transcription coregulator activity |
Gene name | SUPT20H |
Protein name | Transcription factor SPT20 homolog (p38-interacting protein) (p38IP) SPT20 homolog, SAGA complex component SPT20 homolog, SAGA complex component (cDNA FLJ54575, highly similar to Protein FAM48A) |
Synonyms | FAM48A FP757 C13orf19 |
Description | FUNCTION: Required for MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) activation during gastrulation. Required for down-regulation of E-cadherin during gastrulation by regulating E-cadherin protein level downstream from NCK-interacting kinase (NIK) and independently of the regulation of transcription by FGF signaling and Snail (By similarity). Required for starvation-induced ATG9A trafficking during autophagy. . |
Accessions | ENST00000490716.5 ENST00000497318.1 ENST00000495071.6 ENST00000356185.7 [Q8NEM7-2] Q8NEM7 ENST00000464744.5 [Q8NEM7-2] H7C5F9 C9JQS2 ENST00000469488.6 ENST00000475892.5 [Q8NEM7-3] ENST00000350612.11 [Q8NEM7-1] R4GND2 B4E2D5 ENST00000360252.8 [Q8NEM7-2] |