Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 11 studies | 33% ± 15% | |
endothelial cell | 10 studies | 29% ± 11% | |
glutamatergic neuron | 10 studies | 47% ± 26% | |
oligodendrocyte precursor cell | 10 studies | 28% ± 12% | |
adipocyte | 8 studies | 23% ± 6% | |
GABAergic neuron | 8 studies | 45% ± 23% | |
natural killer cell | 7 studies | 21% ± 5% | |
macrophage | 7 studies | 26% ± 7% | |
microglial cell | 7 studies | 26% ± 7% | |
epithelial cell | 7 studies | 33% ± 13% | |
oligodendrocyte | 7 studies | 26% ± 7% | |
B cell | 6 studies | 18% ± 1% | |
ciliated cell | 6 studies | 29% ± 8% | |
interneuron | 6 studies | 43% ± 24% | |
CD16-negative, CD56-bright natural killer cell, human | 5 studies | 22% ± 5% | |
neuron | 5 studies | 35% ± 10% | |
myeloid cell | 5 studies | 21% ± 2% | |
retina horizontal cell | 5 studies | 25% ± 9% | |
basal cell | 5 studies | 28% ± 13% | |
fibroblast | 5 studies | 23% ± 5% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 22% ± 5% | |
amacrine cell | 4 studies | 26% ± 6% | |
granule cell | 4 studies | 25% ± 9% | |
retinal ganglion cell | 4 studies | 36% ± 12% | |
retinal cone cell | 4 studies | 25% ± 4% | |
lymphocyte | 4 studies | 23% ± 3% | |
dendritic cell | 4 studies | 27% ± 13% | |
hematopoietic precursor cell | 3 studies | 26% ± 9% | |
retinal bipolar neuron | 3 studies | 20% ± 3% | |
GABAergic interneuron | 3 studies | 27% ± 2% | |
retinal pigment epithelial cell | 3 studies | 29% ± 14% | |
retinal rod cell | 3 studies | 17% ± 1% | |
respiratory goblet cell | 3 studies | 17% ± 1% | |
hepatocyte | 3 studies | 26% ± 12% | |
type I pneumocyte | 3 studies | 20% ± 4% | |
abnormal cell | 3 studies | 26% ± 9% | |
alveolar macrophage | 3 studies | 22% ± 6% | |
monocyte | 3 studies | 22% ± 4% | |
pericyte | 3 studies | 21% ± 3% | |
smooth muscle cell | 3 studies | 17% ± 3% | |
goblet cell | 3 studies | 28% ± 12% | |
transit amplifying cell | 3 studies | 39% ± 23% | |
brush cell | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 11264.71 | 21 / 21 | 100% | 30.64 | 504 / 504 |
esophagus | 100% | 10630.30 | 1445 / 1445 | 100% | 30.32 | 183 / 183 |
prostate | 100% | 17437.02 | 245 / 245 | 100% | 43.72 | 502 / 502 |
uterus | 100% | 13959.98 | 170 / 170 | 100% | 34.31 | 459 / 459 |
thymus | 100% | 22704.24 | 653 / 653 | 100% | 43.04 | 604 / 605 |
breast | 100% | 11044.71 | 459 / 459 | 100% | 41.66 | 1116 / 1118 |
intestine | 100% | 12355.98 | 966 / 966 | 100% | 27.06 | 525 / 527 |
ovary | 100% | 12717.38 | 180 / 180 | 99% | 31.19 | 427 / 430 |
brain | 99% | 15391.56 | 2621 / 2642 | 100% | 74.08 | 705 / 705 |
skin | 100% | 7975.74 | 1804 / 1809 | 99% | 34.02 | 469 / 472 |
kidney | 100% | 11296.93 | 89 / 89 | 99% | 27.89 | 891 / 901 |
adrenal gland | 100% | 12274.33 | 258 / 258 | 99% | 37.56 | 227 / 230 |
lung | 100% | 12520.47 | 578 / 578 | 98% | 27.77 | 1132 / 1155 |
stomach | 100% | 8186.56 | 358 / 359 | 98% | 25.77 | 279 / 286 |
pancreas | 98% | 4871.95 | 322 / 328 | 99% | 28.80 | 176 / 178 |
liver | 100% | 6047.44 | 226 / 226 | 91% | 17.89 | 368 / 406 |
adipose | 100% | 9279.55 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 42.96 | 29 / 29 |
spleen | 100% | 14844.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.23 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 29.02 | 1 / 1 |
muscle | 100% | 7193.05 | 800 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 7897.52 | 1326 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 7491.52 | 840 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 18.46 | 72 / 80 |
peripheral blood | 86% | 7122.78 | 798 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_0016604 | Cellular component | nuclear body |
GO_0005654 | Cellular component | nucleoplasm |
GO_0003723 | Molecular function | RNA binding |
Gene name | SUGP2 |
Protein name | SURP and G-patch domain-containing protein 2 (Arginine/serine-rich-splicing factor 14) (Splicing factor, arginine/serine-rich 14) SURP and G-patch domain containing 2 |
Synonyms | SFRS14 KIAA0365 |
Description | FUNCTION: May play a role in mRNA splicing. . |
Accessions | ENST00000452918.7 [Q8IX01-1] M0R216 ENST00000598240.1 ENST00000594773.5 [Q8IX01-3] M0R2Z9 M0R2Y3 ENST00000601879.5 [Q8IX01-1] ENST00000597280.5 ENST00000330854.15 [Q8IX01-4] ENST00000337018.10 [Q8IX01-1] M0R065 ENST00000594445.1 ENST00000600377.1 ENST00000593795.5 M0R1Y3 ENST00000600239.5 Q8IX01 M0R3F6 |