Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 26% ± 11% | |
astrocyte | 10 studies | 30% ± 15% | |
microglial cell | 7 studies | 25% ± 8% | |
ciliated cell | 7 studies | 28% ± 20% | |
oligodendrocyte | 7 studies | 26% ± 8% | |
macrophage | 6 studies | 27% ± 8% | |
GABAergic neuron | 6 studies | 38% ± 22% | |
oligodendrocyte precursor cell | 5 studies | 26% ± 9% | |
epithelial cell | 5 studies | 47% ± 25% | |
fibroblast | 4 studies | 20% ± 5% | |
glutamatergic neuron | 4 studies | 52% ± 21% | |
dendritic cell | 4 studies | 25% ± 6% | |
interneuron | 4 studies | 41% ± 24% | |
neuron | 4 studies | 35% ± 15% | |
plasmacytoid dendritic cell | 4 studies | 22% ± 5% | |
lymphocyte | 3 studies | 22% ± 4% | |
alveolar macrophage | 3 studies | 24% ± 7% | |
endothelial cell of lymphatic vessel | 3 studies | 23% ± 2% | |
monocyte | 3 studies | 19% ± 2% | |
basal cell | 3 studies | 25% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1336.07 | 1445 / 1445 | 100% | 13.12 | 183 / 183 |
intestine | 100% | 1695.58 | 966 / 966 | 100% | 21.57 | 527 / 527 |
lung | 100% | 1564.62 | 578 / 578 | 100% | 17.12 | 1155 / 1155 |
ovary | 100% | 1902.90 | 180 / 180 | 100% | 28.32 | 430 / 430 |
pancreas | 100% | 1402.01 | 328 / 328 | 100% | 23.05 | 178 / 178 |
prostate | 100% | 1861.05 | 245 / 245 | 100% | 18.44 | 502 / 502 |
stomach | 100% | 1442.76 | 359 / 359 | 100% | 18.22 | 286 / 286 |
brain | 100% | 1428.68 | 2640 / 2642 | 100% | 21.67 | 705 / 705 |
breast | 100% | 1709.88 | 459 / 459 | 100% | 22.55 | 1117 / 1118 |
uterus | 100% | 2482.84 | 170 / 170 | 100% | 23.75 | 458 / 459 |
thymus | 100% | 1556.93 | 653 / 653 | 100% | 16.87 | 603 / 605 |
kidney | 100% | 2634.87 | 89 / 89 | 100% | 17.15 | 898 / 901 |
liver | 100% | 1161.18 | 226 / 226 | 100% | 15.13 | 404 / 406 |
bladder | 100% | 1516.52 | 21 / 21 | 99% | 18.33 | 501 / 504 |
adrenal gland | 100% | 2207.64 | 258 / 258 | 99% | 20.15 | 228 / 230 |
skin | 100% | 1778.72 | 1809 / 1809 | 99% | 20.98 | 467 / 472 |
adipose | 100% | 1552.54 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.27 | 29 / 29 |
spleen | 100% | 1835.54 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.45 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.29 | 1 / 1 |
blood vessel | 100% | 1390.64 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1188.39 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 951.97 | 849 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 17.20 | 77 / 80 |
peripheral blood | 96% | 985.76 | 890 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061025 | Biological process | membrane fusion |
GO_1903358 | Biological process | regulation of Golgi organization |
GO_1902953 | Biological process | positive regulation of ER to Golgi vesicle-mediated transport |
GO_0006886 | Biological process | intracellular protein transport |
GO_1902117 | Biological process | positive regulation of organelle assembly |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0090158 | Biological process | endoplasmic reticulum membrane organization |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0031201 | Cellular component | SNARE complex |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | STX18 |
Protein name | Syntaxin 18 Syntaxin-18 Syntaxin-18 (Cell growth-inhibiting gene 9 protein) |
Synonyms | GIG9 |
Description | FUNCTION: Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. . FUNCTION: Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. . |
Accessions | D6RC71 ENST00000505286.5 Q9P2W9 D6RF48 ENST00000306200.7 ENST00000507908.5 |