Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 16 studies | 26% ± 10% | |
oligodendrocyte | 14 studies | 43% ± 12% | |
astrocyte | 9 studies | 27% ± 13% | |
oligodendrocyte precursor cell | 8 studies | 23% ± 6% | |
microglial cell | 7 studies | 23% ± 6% | |
GABAergic neuron | 7 studies | 35% ± 18% | |
macrophage | 6 studies | 29% ± 6% | |
glutamatergic neuron | 6 studies | 47% ± 24% | |
epithelial cell | 5 studies | 35% ± 19% | |
cardiac muscle cell | 5 studies | 38% ± 11% | |
endothelial cell of lymphatic vessel | 5 studies | 27% ± 7% | |
fibroblast | 5 studies | 20% ± 4% | |
type I pneumocyte | 5 studies | 23% ± 6% | |
interneuron | 5 studies | 33% ± 17% | |
squamous epithelial cell | 4 studies | 36% ± 17% | |
monocyte | 4 studies | 20% ± 3% | |
ciliated cell | 3 studies | 19% ± 3% | |
retina horizontal cell | 3 studies | 26% ± 10% | |
alveolar macrophage | 3 studies | 23% ± 6% | |
club cell | 3 studies | 19% ± 5% | |
lymphocyte | 3 studies | 25% ± 4% | |
basal cell | 3 studies | 36% ± 25% | |
goblet cell | 3 studies | 44% ± 23% | |
transit amplifying cell | 3 studies | 36% ± 28% | |
adipocyte | 3 studies | 17% ± 2% | |
smooth muscle cell | 3 studies | 19% ± 3% | |
neuron | 3 studies | 45% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3328.27 | 1445 / 1445 | 100% | 20.46 | 183 / 183 |
ovary | 100% | 2053.40 | 180 / 180 | 100% | 9.01 | 429 / 430 |
lung | 100% | 2502.07 | 577 / 578 | 100% | 12.69 | 1154 / 1155 |
breast | 100% | 2895.28 | 459 / 459 | 100% | 16.53 | 1115 / 1118 |
brain | 100% | 2653.93 | 2632 / 2642 | 100% | 11.38 | 705 / 705 |
bladder | 100% | 2188.90 | 21 / 21 | 99% | 10.34 | 500 / 504 |
intestine | 100% | 2304.10 | 966 / 966 | 99% | 12.52 | 522 / 527 |
prostate | 100% | 1669.16 | 245 / 245 | 99% | 10.86 | 497 / 502 |
stomach | 100% | 1541.62 | 358 / 359 | 99% | 13.98 | 283 / 286 |
thymus | 100% | 1793.90 | 652 / 653 | 98% | 6.94 | 595 / 605 |
uterus | 100% | 2162.40 | 170 / 170 | 98% | 11.20 | 450 / 459 |
kidney | 100% | 1560.04 | 89 / 89 | 97% | 9.21 | 874 / 901 |
skin | 100% | 4053.63 | 1809 / 1809 | 94% | 8.76 | 442 / 472 |
pancreas | 95% | 956.28 | 312 / 328 | 98% | 8.97 | 175 / 178 |
adrenal gland | 100% | 1837.38 | 258 / 258 | 89% | 4.20 | 204 / 230 |
liver | 93% | 781.54 | 211 / 226 | 82% | 3.90 | 334 / 406 |
blood vessel | 100% | 2571.28 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 7.81 | 29 / 29 |
spleen | 100% | 1866.59 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.09 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.42 | 1 / 1 |
adipose | 100% | 2881.61 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2347.78 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 2737.10 | 840 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 1704.32 | 843 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 71% | 3.50 | 57 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0070830 | Biological process | bicellular tight junction assembly |
GO_0016055 | Biological process | Wnt signaling pathway |
GO_0016358 | Biological process | dendrite development |
GO_0007626 | Biological process | locomotory behavior |
GO_0043197 | Cellular component | dendritic spine |
GO_0016020 | Cellular component | membrane |
GO_0090443 | Cellular component | FAR/SIN/STRIPAK complex |
GO_0043025 | Cellular component | neuronal cell body |
GO_0030425 | Cellular component | dendrite |
GO_0005829 | Cellular component | cytosol |
GO_0014069 | Cellular component | postsynaptic density |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0051721 | Molecular function | protein phosphatase 2A binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
GO_0070016 | Molecular function | armadillo repeat domain binding |
Gene name | STRN |
Protein name | Striatin STRN protein |
Synonyms | |
Description | FUNCTION: Calmodulin-binding protein which may function as scaffolding or signaling protein and may play a role in dendritic Ca(2+) signaling. |
Accessions | Q3B874 O43815 ENST00000263918.9 [O43815-1] |