Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 9 studies | 47% ± 24% | |
retinal rod cell | 8 studies | 33% ± 9% | |
retinal cone cell | 7 studies | 51% ± 22% | |
platelet | 6 studies | 22% ± 3% | |
Mueller cell | 6 studies | 40% ± 13% | |
GABAergic neuron | 5 studies | 42% ± 19% | |
pancreatic A cell | 4 studies | 39% ± 18% | |
astrocyte | 4 studies | 26% ± 8% | |
neuron | 3 studies | 27% ± 6% | |
granule cell | 3 studies | 22% ± 5% | |
interneuron | 3 studies | 38% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1435.96 | 244 / 245 | 99% | 8.87 | 495 / 502 |
uterus | 97% | 1064.14 | 165 / 170 | 98% | 15.44 | 452 / 459 |
brain | 99% | 3224.69 | 2610 / 2642 | 96% | 12.36 | 680 / 705 |
intestine | 99% | 1635.57 | 960 / 966 | 96% | 11.67 | 504 / 527 |
esophagus | 96% | 790.99 | 1393 / 1445 | 98% | 13.77 | 180 / 183 |
thymus | 97% | 680.33 | 635 / 653 | 96% | 8.46 | 578 / 605 |
bladder | 100% | 835.48 | 21 / 21 | 92% | 9.64 | 466 / 504 |
kidney | 100% | 1280.13 | 89 / 89 | 90% | 10.56 | 814 / 901 |
stomach | 90% | 505.31 | 322 / 359 | 97% | 12.46 | 276 / 286 |
skin | 94% | 821.72 | 1706 / 1809 | 86% | 11.49 | 407 / 472 |
lung | 81% | 466.83 | 468 / 578 | 95% | 10.21 | 1098 / 1155 |
liver | 96% | 776.44 | 217 / 226 | 75% | 7.83 | 304 / 406 |
breast | 54% | 288.47 | 249 / 459 | 99% | 15.03 | 1104 / 1118 |
pancreas | 56% | 265.63 | 183 / 328 | 94% | 8.40 | 167 / 178 |
adrenal gland | 60% | 276.83 | 156 / 258 | 72% | 6.40 | 165 / 230 |
ovary | 33% | 156.80 | 59 / 180 | 99% | 10.97 | 424 / 430 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.17 | 45 / 45 |
spleen | 99% | 650.17 | 239 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 90% | 619.71 | 1207 / 1335 | 0% | 0 | 0 / 0 |
heart | 85% | 780.93 | 732 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 66% | 3.99 | 19 / 29 |
muscle | 58% | 356.90 | 469 / 803 | 0% | 0 | 0 / 0 |
adipose | 35% | 175.22 | 422 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 32% | 244.98 | 296 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 25% | 1.34 | 20 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007098 | Biological process | centrosome cycle |
GO_0060271 | Biological process | cilium assembly |
GO_0007155 | Biological process | cell adhesion |
GO_0035020 | Biological process | regulation of Rac protein signal transduction |
GO_0035735 | Biological process | intraciliary transport involved in cilium assembly |
GO_2000145 | Biological process | regulation of cell motility |
GO_0032991 | Cellular component | protein-containing complex |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005912 | Cellular component | adherens junction |
GO_0034451 | Cellular component | centriolar satellite |
GO_0005737 | Cellular component | cytoplasm |
GO_0031252 | Cellular component | cell leading edge |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | SSX2IP |
Protein name | SSX family member 2 interacting protein Afadin- and alpha-actinin-binding protein (ADIP) (Afadin DIL domain-interacting protein) (SSX2-interacting protein) |
Synonyms | KIAA0923 |
Description | FUNCTION: Belongs to an adhesion system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). May connect the nectin-afadin and E-cadherin-catenin system through alpha-actinin and may be involved in organization of the actin cytoskeleton at AJs through afadin and alpha-actinin (By similarity). Involved in cell movement: localizes at the leading edge of moving cells in response to PDGF and is required for the formation of the leading edge and the promotion of cell movement, possibly via activation of Rac signaling (By similarity). Acts as a centrosome maturation factor, probably by maintaining the integrity of the pericentriolar material and proper microtubule nucleation at mitotic spindle poles. The function seems to implicate at least in part WRAP73; the SSX2IP:WRAP73 complex is proposed to act as regulator of spindle anchoring at the mitotic centrosome . Involved in ciliogenesis . It is required for targeted recruitment of the BBSome, CEP290, RAB8, and SSTR3 to the cilia . . |
Accessions | ENST00000342203.8 [Q9Y2D8-1] S4R403 Q9Y2D8 ENST00000603677.1 ENST00000437941.6 [Q9Y2D8-3] C9JIX7 S4R2Y6 ENST00000476905.6 ENST00000605755.5 [Q9Y2D8-3] ENST00000481102.5 [Q9Y2D8-2] ENST00000422026.1 |