SSC5D | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of SSC5D at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	95%	1862.38	437 / 459	93%	14.80	1036 / 1118
prostate	93%	1963.27	229 / 245	88%	7.40	443 / 502
lung	96%	1809.03	552 / 578	85%	10.27	987 / 1155
ovary	100%	2892.15	180 / 180	73%	7.45	315 / 430
uterus	99%	6689.33	169 / 170	63%	8.29	289 / 459
intestine	92%	4375.64	889 / 966	67%	6.71	355 / 527
bladder	100%	2203.10	21 / 21	59%	5.77	295 / 504
skin	83%	1595.70	1496 / 1809	72%	6.41	338 / 472
esophagus	81%	2929.83	1173 / 1445	72%	6.86	132 / 183
thymus	78%	794.74	509 / 653	65%	3.85	392 / 605
stomach	58%	1700.91	210 / 359	74%	10.66	211 / 286
kidney	58%	546.63	52 / 89	67%	7.27	603 / 901
adrenal gland	38%	268.00	98 / 258	76%	31.75	174 / 230
pancreas	8%	56.07	26 / 328	92%	16.96	164 / 178
ureter	0%	0	0 / 0	100%	4.91	1 / 1
spleen	100%	2505.76	240 / 241	0%	0	0 / 0
adipose	98%	2459.63	1185 / 1204	0%	0	0 / 0
blood vessel	94%	2059.55	1249 / 1335	0%	0	0 / 0
heart	78%	1611.84	672 / 861	0%	0	0 / 0
brain	32%	284.86	849 / 2642	40%	2.37	280 / 705
lymph node	0%	0	0 / 0	48%	1.58	14 / 29
tonsil	0%	0	0 / 0	40%	2.22	18 / 45
eye	0%	0	0 / 0	39%	2.18	31 / 80
liver	8%	60.76	19 / 226	24%	1.28	97 / 406
muscle	23%	194.96	186 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0050829	Biological process	defense response to Gram-negative bacterium
GO_0006952	Biological process	defense response
GO_0016192	Biological process	vesicle-mediated transport
GO_0050830	Biological process	defense response to Gram-positive bacterium
GO_0042494	Biological process	detection of bacterial lipoprotein
GO_0032717	Biological process	negative regulation of interleukin-8 production
GO_0045087	Biological process	innate immune response
GO_0005615	Cellular component	extracellular space
GO_0062023	Cellular component	collagen-containing extracellular matrix
GO_0016020	Cellular component	membrane
GO_0031012	Cellular component	extracellular matrix
GO_0005737	Cellular component	cytoplasm
GO_0043236	Molecular function	laminin binding
GO_0050840	Molecular function	extracellular matrix binding
GO_0001968	Molecular function	fibronectin binding
GO_0005515	Molecular function	protein binding
GO_0005044	Molecular function	scavenger receptor activity

Gene name	SSC5D
Protein name	Scavenger receptor cysteine rich family member with 5 domains Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D (Soluble scavenger protein with 5 SRCR domains) (SSc5D)
Synonyms
Description	FUNCTION: Binds to extracellular matrix proteins. Binds to pathogen-associated molecular patterns (PAMPs) present on the cell walls of Gram-positive and Gram-negative bacteria and fungi, behaving as a pattern recognition receptor (PRR). Induces bacterial and fungal aggregation and subsequent inhibition of PAMP-induced cytokine release. Does not possess intrinsic bactericidal activity. May play a role in the innate defense and homeostasis of certain epithelial surfaces (By similarity). .
Accessions	ENST00000389623.11 [A1L4H1-1] ENST00000587166.5 [A1L4H1-2] K7EPL3 A1L4H1 M0QZ17 ENST00000594321.5 ENST00000589020.1

SSC5D report