Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 13 studies | 59% ± 21% | |
GABAergic neuron | 10 studies | 60% ± 25% | |
amacrine cell | 8 studies | 51% ± 4% | |
retinal cone cell | 8 studies | 65% ± 20% | |
retinal rod cell | 8 studies | 52% ± 24% | |
neuron | 7 studies | 42% ± 16% | |
interneuron | 7 studies | 67% ± 22% | |
retinal ganglion cell | 6 studies | 29% ± 11% | |
retinal bipolar neuron | 5 studies | 53% ± 12% | |
granule cell | 4 studies | 54% ± 17% | |
GABAergic interneuron | 3 studies | 67% ± 2% | |
GABAergic amacrine cell | 3 studies | 70% ± 5% | |
OFF-bipolar cell | 3 studies | 62% ± 16% | |
ON-bipolar cell | 3 studies | 61% ± 15% | |
glycinergic amacrine cell | 3 studies | 56% ± 8% | |
rod bipolar cell | 3 studies | 55% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 94% | 5055.02 | 2493 / 2642 | 64% | 4.56 | 453 / 705 |
adrenal gland | 18% | 102.23 | 47 / 258 | 68% | 5.25 | 156 / 230 |
blood vessel | 52% | 115.49 | 691 / 1335 | 0% | 0 | 0 / 0 |
heart | 40% | 86.47 | 347 / 861 | 0% | 0 | 0 / 0 |
stomach | 24% | 45.62 | 85 / 359 | 1% | 0.06 | 4 / 286 |
thymus | 8% | 14.14 | 50 / 653 | 4% | 0.12 | 23 / 605 |
kidney | 3% | 5.91 | 3 / 89 | 6% | 0.15 | 58 / 901 |
pancreas | 0% | 0.48 | 1 / 328 | 4% | 0.12 | 7 / 178 |
uterus | 2% | 3.71 | 3 / 170 | 1% | 0.03 | 5 / 459 |
ovary | 2% | 4.32 | 3 / 180 | 1% | 0.02 | 5 / 430 |
eye | 0% | 0 | 0 / 0 | 3% | 0.20 | 2 / 80 |
lung | 1% | 0.73 | 3 / 578 | 2% | 0.04 | 21 / 1155 |
prostate | 2% | 2.91 | 4 / 245 | 1% | 0.02 | 3 / 502 |
esophagus | 1% | 1.51 | 12 / 1445 | 1% | 0.02 | 2 / 183 |
muscle | 2% | 2.86 | 13 / 803 | 0% | 0 | 0 / 0 |
bladder | 0% | 0 | 0 / 21 | 2% | 0.07 | 8 / 504 |
skin | 0% | 0.36 | 3 / 1809 | 1% | 0.06 | 5 / 472 |
intestine | 1% | 0.93 | 5 / 966 | 1% | 0.02 | 3 / 527 |
breast | 0% | 0 | 0 / 459 | 1% | 0.06 | 11 / 1118 |
liver | 0% | 0 | 0 / 226 | 0% | 0.10 | 2 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0007605 | Biological process | sensory perception of sound |
GO_0042551 | Biological process | neuron maturation |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_0030154 | Biological process | cell differentiation |
GO_0000381 | Biological process | regulation of alternative mRNA splicing, via spliceosome |
GO_0007399 | Biological process | nervous system development |
GO_0005634 | Cellular component | nucleus |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
Gene name | SRRM4 |
Protein name | Serine/arginine repetitive matrix 4 Serine/arginine repetitive matrix protein 4 (Medulloblastoma antigen MU-MB-2.76) (Neural-specific serine/arginine repetitive splicing factor of 100 kDa) (Neural-specific SR-related protein of 100 kDa) (nSR100) |
Synonyms | KIAA1853 |
Description | FUNCTION: Splicing factor specifically required for neural cell differentiation. Acts in conjunction with nPTB/PTBP2 by binding directly to its regulated target transcripts and promotes neural-specific exon inclusion in many genes that function in neural cell differentiation. Required to promote the inclusion of neural-specific exon 10 in nPTB/PTBP2, leading to increased expression of neural-specific nPTB/PTBP2. Also promotes the inclusion of exon 16 in DAAM1 in neuron extracts (By similarity). Promotes alternative splicing of REST transcripts to produce REST isoform 3 (REST4) with greatly reduced repressive activity, thereby activating expression of REST targets in neural cells . Plays an important role during embryonic development as well as in the proper functioning of the adult nervous system. Regulates alternative splicing events in genes with important neuronal functions (By similarity). . |
Accessions | ENST00000267260.5 ENST00000641899.1 V5T9A0 A0A286YF08 A7MD48 |