Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 22 studies | 33% ± 12% | |
macrophage | 18 studies | 36% ± 22% | |
astrocyte | 18 studies | 46% ± 19% | |
endothelial cell | 18 studies | 29% ± 17% | |
oligodendrocyte precursor cell | 15 studies | 37% ± 13% | |
microglial cell | 15 studies | 52% ± 16% | |
oligodendrocyte | 13 studies | 33% ± 11% | |
GABAergic neuron | 9 studies | 39% ± 18% | |
myeloid cell | 9 studies | 36% ± 13% | |
adipocyte | 9 studies | 33% ± 13% | |
pericyte | 8 studies | 34% ± 16% | |
interneuron | 7 studies | 43% ± 14% | |
neuron | 7 studies | 50% ± 17% | |
retinal ganglion cell | 7 studies | 52% ± 19% | |
glutamatergic neuron | 7 studies | 52% ± 19% | |
epithelial cell | 6 studies | 37% ± 12% | |
Mueller cell | 6 studies | 60% ± 16% | |
endothelial cell of lymphatic vessel | 6 studies | 32% ± 10% | |
ciliated cell | 6 studies | 28% ± 11% | |
smooth muscle cell | 6 studies | 25% ± 5% | |
dendritic cell | 5 studies | 33% ± 7% | |
squamous epithelial cell | 4 studies | 37% ± 22% | |
podocyte | 4 studies | 74% ± 14% | |
brush cell | 4 studies | 32% ± 8% | |
chondrocyte | 4 studies | 24% ± 6% | |
respiratory goblet cell | 4 studies | 35% ± 14% | |
basal cell | 4 studies | 30% ± 14% | |
goblet cell | 4 studies | 37% ± 31% | |
ionocyte | 3 studies | 30% ± 6% | |
cholangiocyte | 3 studies | 36% ± 13% | |
glial cell | 3 studies | 33% ± 12% | |
progenitor cell | 3 studies | 53% ± 13% | |
club cell | 3 studies | 28% ± 7% | |
conventional dendritic cell | 3 studies | 17% ± 1% | |
neural progenitor cell | 3 studies | 53% ± 21% | |
connective tissue cell | 3 studies | 20% ± 6% | |
ependymal cell | 3 studies | 45% ± 24% | |
adventitial cell | 3 studies | 30% ± 10% | |
alveolar macrophage | 3 studies | 19% ± 1% | |
monocyte | 3 studies | 25% ± 8% | |
myofibroblast cell | 3 studies | 23% ± 7% | |
mucus secreting cell | 3 studies | 37% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 1028.36 | 2606 / 2642 | 99% | 5.63 | 696 / 705 |
esophagus | 100% | 1238.23 | 1443 / 1445 | 97% | 4.44 | 178 / 183 |
ovary | 100% | 1895.61 | 180 / 180 | 96% | 4.02 | 412 / 430 |
skin | 98% | 2517.79 | 1779 / 1809 | 95% | 5.57 | 449 / 472 |
breast | 100% | 1898.45 | 459 / 459 | 91% | 3.56 | 1013 / 1118 |
kidney | 100% | 1199.75 | 89 / 89 | 90% | 2.58 | 813 / 901 |
pancreas | 100% | 1305.00 | 328 / 328 | 89% | 2.51 | 159 / 178 |
intestine | 100% | 1299.95 | 965 / 966 | 86% | 2.13 | 455 / 527 |
stomach | 94% | 721.25 | 338 / 359 | 91% | 3.06 | 259 / 286 |
thymus | 100% | 1767.82 | 653 / 653 | 84% | 2.59 | 507 / 605 |
lung | 100% | 2702.34 | 578 / 578 | 82% | 2.30 | 951 / 1155 |
adrenal gland | 100% | 1570.42 | 258 / 258 | 77% | 2.21 | 177 / 230 |
uterus | 100% | 1992.78 | 170 / 170 | 73% | 1.84 | 335 / 459 |
bladder | 100% | 1263.14 | 21 / 21 | 70% | 1.59 | 351 / 504 |
prostate | 100% | 1058.82 | 244 / 245 | 52% | 0.92 | 262 / 502 |
adipose | 100% | 1835.75 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1076.34 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.22 | 1 / 1 |
blood vessel | 99% | 869.34 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 89% | 554.87 | 767 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 55% | 1.04 | 44 / 80 |
tonsil | 0% | 0 | 0 / 0 | 53% | 1.32 | 24 / 45 |
liver | 27% | 117.60 | 62 / 226 | 21% | 0.67 | 86 / 406 |
muscle | 17% | 69.70 | 140 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 4% | 14.51 | 39 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0030336 | Biological process | negative regulation of cell migration |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | SRGAP1 |
Protein name | SLIT-ROBO Rho GTPase activating protein 1 SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1) (Rho GTPase-activating protein 13) Alternative protein SRGAP1 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1, isoform CRA_a (SLIT-ROBO Rho GTPase-activating protein 1) |
Synonyms | hCG_1818050 KIAA1304 ARHGAP13 |
Description | FUNCTION: GTPase-activating protein for RhoA and Cdc42 small GTPases. Together with CDC42 seems to be involved in the pathway mediating the repulsive signaling of Robo and Slit proteins in neuronal migration. SLIT2, probably through interaction with ROBO1, increases the interaction of SRGAP1 with ROBO1 and inactivates CDC42. . |
Accessions | G5EA48 ENST00000631006.2 L0R5D0 A0A2X0SFI2 A0A8Q3WKV0 Q7Z6B7 ENST00000355086.8 [Q7Z6B7-1] ENST00000695902.1 ENST00000631006.3 [Q7Z6B7-2] |