Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 9 studies | 26% ± 9% | |
oligodendrocyte precursor cell | 8 studies | 28% ± 12% | |
endothelial cell | 7 studies | 26% ± 10% | |
GABAergic neuron | 7 studies | 42% ± 18% | |
interneuron | 6 studies | 40% ± 21% | |
macrophage | 6 studies | 23% ± 4% | |
astrocyte | 6 studies | 31% ± 11% | |
glutamatergic neuron | 5 studies | 51% ± 19% | |
microglial cell | 5 studies | 24% ± 5% | |
neuron | 5 studies | 39% ± 13% | |
epithelial cell | 4 studies | 29% ± 4% | |
GABAergic interneuron | 3 studies | 24% ± 6% | |
myeloid cell | 3 studies | 19% ± 3% | |
alveolar macrophage | 3 studies | 19% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 35% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1740.77 | 2642 / 2642 | 100% | 17.54 | 705 / 705 |
esophagus | 100% | 952.59 | 1444 / 1445 | 100% | 15.88 | 183 / 183 |
breast | 100% | 1014.52 | 459 / 459 | 100% | 12.05 | 1117 / 1118 |
ovary | 100% | 1232.08 | 180 / 180 | 100% | 9.44 | 429 / 430 |
prostate | 100% | 944.15 | 245 / 245 | 100% | 9.47 | 500 / 502 |
uterus | 100% | 1151.46 | 170 / 170 | 99% | 11.80 | 456 / 459 |
thymus | 100% | 1002.03 | 653 / 653 | 99% | 10.26 | 599 / 605 |
lung | 99% | 833.96 | 571 / 578 | 100% | 15.08 | 1155 / 1155 |
bladder | 100% | 1010.33 | 21 / 21 | 99% | 10.11 | 497 / 504 |
stomach | 100% | 702.94 | 358 / 359 | 98% | 10.07 | 279 / 286 |
intestine | 100% | 1020.08 | 966 / 966 | 97% | 9.57 | 511 / 527 |
pancreas | 98% | 582.19 | 323 / 328 | 98% | 8.14 | 175 / 178 |
liver | 100% | 678.86 | 226 / 226 | 95% | 4.92 | 384 / 406 |
adrenal gland | 100% | 974.30 | 258 / 258 | 92% | 6.04 | 212 / 230 |
kidney | 99% | 561.57 | 88 / 89 | 91% | 6.09 | 822 / 901 |
skin | 100% | 1118.50 | 1808 / 1809 | 90% | 7.84 | 423 / 472 |
adipose | 100% | 1034.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 8.78 | 29 / 29 |
muscle | 100% | 1172.62 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1071.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.69 | 1 / 1 |
blood vessel | 100% | 878.52 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 465.22 | 840 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 995.63 | 820 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 71% | 4.14 | 57 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051260 | Biological process | protein homooligomerization |
GO_0032506 | Biological process | cytokinetic process |
GO_0008089 | Biological process | anterograde axonal transport |
GO_0051013 | Biological process | microtubule severing |
GO_0061640 | Biological process | cytoskeleton-dependent cytokinesis |
GO_0000281 | Biological process | mitotic cytokinesis |
GO_0090148 | Biological process | membrane fission |
GO_0007409 | Biological process | axonogenesis |
GO_0031117 | Biological process | positive regulation of microtubule depolymerization |
GO_0010458 | Biological process | exit from mitosis |
GO_0034214 | Biological process | protein hexamerization |
GO_0007084 | Biological process | mitotic nuclear membrane reassembly |
GO_0051228 | Biological process | mitotic spindle disassembly |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0019896 | Biological process | axonal transport of mitochondrion |
GO_0031468 | Biological process | nuclear membrane reassembly |
GO_0001578 | Biological process | microtubule bundle formation |
GO_0032467 | Biological process | positive regulation of cytokinesis |
GO_0030496 | Cellular component | midbody |
GO_0005811 | Cellular component | lipid droplet |
GO_0005874 | Cellular component | microtubule |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0000922 | Cellular component | spindle pole |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005813 | Cellular component | centrosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0005737 | Cellular component | cytoplasm |
GO_0030424 | Cellular component | axon |
GO_0005768 | Cellular component | endosome |
GO_0031965 | Cellular component | nuclear membrane |
GO_1904115 | Cellular component | axon cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0048487 | Molecular function | beta-tubulin binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0008568 | Molecular function | microtubule severing ATPase activity |
GO_0043014 | Molecular function | alpha-tubulin binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0005524 | Molecular function | ATP binding |
GO_0016853 | Molecular function | isomerase activity |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | SPAST |
Protein name | Spastin Spastin (EC 5.6.1.1) (Spastic paraplegia 4 protein) microtubule-severing ATPase (EC 5.6.1.1) Spastin (EC 5.6.1.1) |
Synonyms | KIAA1083 SPG4 ADPSP FSP2 hCG_23080 |
Description | FUNCTION: ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Severing activity is not dependent on tubulin acetylation or detyrosination. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. It is critical for the biogenesis and maintenance of complex microtubule arrays in axons, spindles and cilia. SPAST is involved in abscission step of cytokinesis and nuclear envelope reassembly during anaphase in cooperation with the ESCRT-III complex. Recruited at the midbody, probably by IST1, and participates in membrane fission during abscission together with the ESCRT-III complex. Recruited to the nuclear membrane by IST1 and mediates microtubule severing, promoting nuclear envelope sealing and mitotic spindle disassembly during late anaphase. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and endosome recycling. Recruited by IST1 to endosomes and regulates early endosomal tubulation and recycling by mediating microtubule severing. Probably plays a role in axon growth and the formation of axonal branches. . FUNCTION: ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Severing activity is not dependent on tubulin acetylation or detyrosination. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. It is critical for the biogenesis and maintenance of complex microtubule arrays in axons, spindles and cilia. SPAST is involved in abscission step of cytokinesis and nuclear envelope reassembly during anaphase in cooperation with the ESCRT-III complex. Recruited at the midbody, probably by IST1, and participates in membrane fission during abscission together with the ESCRT-III complex. Recruited to the nuclear membrane by IST1 and mediates microtubule severing, promoting nuclear envelope sealing and mitotic spindle disassembly during late anaphase. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and endosome recycling. Recruited by IST1 to endosomes and regulates early endosomal tubulation and recycling by mediating microtubule severing. Probably plays a role in axon growth and the formation of axonal branches. . FUNCTION: ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Severing activity is not dependent on tubulin acetylation or detyrosination. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. It is critical for the biogenesis and maintenance of complex microtubule arrays in axons, spindles and cilia. SPAST is involved in abscission step of cytokinesis and nuclear envelope reassembly during anaphase in cooperation with the ESCRT-III complex. Recruited at the midbody, probably by IST1, and participates in membrane fission during abscission together with the ESCRT-III complex. Recruited to the nuclear membrane by IST1 and mediates microtubule severing, promoting nuclear envelope sealing and mitotic spindle disassembly during late anaphase. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and endosome recycling. Recruited by IST1 to endosomes and regulates early endosomal tubulation and recycling by mediating microtubule severing. Probably plays a role in axon growth and the formation of axonal branches. . FUNCTION: ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Severing activity is not dependent on tubulin acetylation or detyrosination. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. It is critical for the biogenesis and maintenance of complex microtubule arrays in axons, spindles and cilia. SPAST is involved in abscission step of cytokinesis and nuclear envelope reassembly during anaphase in cooperation with the ESCRT-III complex. Recruited at the midbody, probably by IST1, and participates in membrane fission during abscission together with the ESCRT-III complex. Recruited to the nuclear membrane by IST1 and mediates microtubule severing, promoting nuclear envelope sealing and mitotic spindle disassembly during late anaphase. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and endosome recycling. Recruited by IST1 to endosomes and regulates early endosomal tubulation and recycling by mediating microtubule severing. Probably plays a role in axon growth and the formation of axonal branches. . FUNCTION: ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated . Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold . Severing activity is not dependent on tubulin acetylation or detyrosination . Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. It is critical for the biogenesis and maintenance of complex microtubule arrays in axons, spindles and cilia. SPAST is involved in abscission step of cytokinesis and nuclear envelope reassembly during anaphase in cooperation with the ESCRT-III complex . Recruited at the midbody, probably by IST1, and participates in membrane fission during abscission together with the ESCRT-III complex . Recruited to the nuclear membrane by IST1 and mediates microtubule severing, promoting nuclear envelope sealing and mitotic spindle disassembly during late anaphase . Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and endosome recycling . Recruited by IST1 to endosomes and regulates early endosomal tubulation and recycling by mediating microtubule severing . Probably plays a role in axon growth and the formation of axonal branches . .; FUNCTION: [Isoform 1]: Involved in lipid metabolism by regulating the size and distribution of lipid droplets. . |
Accessions | ENST00000704289.1 ENST00000646082.1 Q9UBP0 ENST00000644408.1 ENST00000643334.1 E5KRP5 ENST00000647133.1 A0A2R8Y7W6 ENST00000642751.1 ENST00000646571.1 [Q9UBP0-2] ENST00000642281.1 E5KRP6 A0A2R8Y481 A0A2R8YGN6 A0A2R8Y7K2 ENST00000645400.1 A0A2R8YEA0 A0A2R8Y4I8 A0A2R8Y5I6 ENST00000642999.1 [Q9UBP0-3] A0A994J6X4 ENST00000642455.1 ENST00000315285.9 [Q9UBP0-1] A0A2R8Y5N9 ENST00000644954.1 [Q9UBP0-4] ENST00000621856.2 A0A2U3TZR0 ENST00000645671.1 A0A2R8YFC9 A0A2R8YCL5 A0A2R8YFW8 ENST00000645730.1 ENST00000643327.1 |