Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 6 studies | 29% ± 10% | |
oligodendrocyte precursor cell | 6 studies | 28% ± 12% | |
ciliated cell | 5 studies | 27% ± 6% | |
basal cell | 4 studies | 25% ± 7% | |
neuron | 4 studies | 46% ± 21% | |
fibroblast | 4 studies | 19% ± 2% | |
astrocyte | 4 studies | 34% ± 11% | |
glutamatergic neuron | 4 studies | 39% ± 12% | |
GABAergic neuron | 3 studies | 34% ± 2% | |
intestinal crypt stem cell | 3 studies | 22% ± 5% | |
transit amplifying cell | 3 studies | 25% ± 9% | |
pericyte | 3 studies | 17% ± 2% | |
connective tissue cell | 3 studies | 32% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 34% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
intestine | 100% | 1511.79 | 966 / 966 | 100% | 51.84 | 525 / 527 |
stomach | 100% | 847.55 | 358 / 359 | 100% | 50.74 | 285 / 286 |
esophagus | 100% | 1262.86 | 1445 / 1445 | 99% | 34.82 | 181 / 183 |
kidney | 100% | 1219.51 | 89 / 89 | 98% | 53.26 | 884 / 901 |
bladder | 100% | 1339.76 | 21 / 21 | 97% | 47.62 | 491 / 504 |
uterus | 100% | 1321.02 | 170 / 170 | 97% | 52.60 | 447 / 459 |
breast | 100% | 1269.36 | 459 / 459 | 97% | 39.85 | 1084 / 1118 |
ovary | 100% | 684.23 | 180 / 180 | 97% | 27.04 | 416 / 430 |
lung | 99% | 833.07 | 573 / 578 | 97% | 35.13 | 1125 / 1155 |
pancreas | 97% | 625.30 | 317 / 328 | 99% | 44.25 | 177 / 178 |
thymus | 100% | 854.19 | 651 / 653 | 96% | 27.27 | 580 / 605 |
skin | 100% | 1388.12 | 1802 / 1809 | 88% | 34.09 | 415 / 472 |
prostate | 100% | 978.27 | 245 / 245 | 86% | 16.05 | 431 / 502 |
adrenal gland | 99% | 1003.84 | 256 / 258 | 86% | 21.50 | 198 / 230 |
brain | 80% | 474.06 | 2126 / 2642 | 99% | 42.55 | 701 / 705 |
liver | 93% | 447.72 | 210 / 226 | 79% | 20.64 | 321 / 406 |
adipose | 100% | 1374.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2194.96 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.81 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 96% | 38.17 | 43 / 45 |
heart | 94% | 818.14 | 812 / 861 | 0% | 0 | 0 / 0 |
spleen | 92% | 390.87 | 221 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 9.94 | 50 / 80 |
muscle | 39% | 206.70 | 314 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 6.92 | 6 / 29 |
peripheral blood | 1% | 4.80 | 9 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000422 | Biological process | autophagy of mitochondrion |
GO_0015031 | Biological process | protein transport |
GO_0034727 | Biological process | piecemeal microautophagy of the nucleus |
GO_0061709 | Biological process | reticulophagy |
GO_2000786 | Biological process | positive regulation of autophagosome assembly |
GO_0032456 | Biological process | endocytic recycling |
GO_0031901 | Cellular component | early endosome membrane |
GO_0000407 | Cellular component | phagophore assembly site |
GO_0005769 | Cellular component | early endosome |
GO_0005515 | Molecular function | protein binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
Gene name | SNX7 |
Protein name | Sorting nexin 7 Sorting nexin-7 |
Synonyms | |
Description | FUNCTION: Involved in the regulation of endocytosis and in several stages of intracellular trafficking . Together with SNX4, involved in autophagosome assembly by regulating trafficking and recycling of phospholipid scramblase ATG9A . . |
Accessions | B7ZC83 ENST00000306121.8 [Q9UNH6-3] ENST00000529992.5 ENST00000454199.1 E9PLE1 E9PNL2 Q9UNH6 ENST00000528824.1 |