Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 11 studies | 38% ± 13% | |
type II pneumocyte | 10 studies | 39% ± 15% | |
microglial cell | 9 studies | 26% ± 10% | |
macrophage | 6 studies | 28% ± 7% | |
dendritic cell | 5 studies | 22% ± 8% | |
oligodendrocyte precursor cell | 5 studies | 21% ± 6% | |
endothelial cell | 4 studies | 26% ± 9% | |
interneuron | 4 studies | 34% ± 19% | |
glutamatergic neuron | 4 studies | 51% ± 17% | |
club cell | 4 studies | 29% ± 5% | |
monocyte | 4 studies | 22% ± 6% | |
classical monocyte | 3 studies | 20% ± 4% | |
neuron | 3 studies | 29% ± 14% | |
epithelial cell | 3 studies | 19% ± 3% | |
GABAergic neuron | 3 studies | 44% ± 8% | |
astrocyte | 3 studies | 28% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3078.32 | 2639 / 2642 | 98% | 13.75 | 692 / 705 |
esophagus | 100% | 1156.11 | 1440 / 1445 | 98% | 10.43 | 180 / 183 |
skin | 100% | 1760.74 | 1807 / 1809 | 98% | 20.27 | 462 / 472 |
breast | 100% | 1506.61 | 459 / 459 | 97% | 11.81 | 1083 / 1118 |
intestine | 100% | 1986.91 | 964 / 966 | 97% | 10.40 | 509 / 527 |
kidney | 100% | 2694.12 | 89 / 89 | 96% | 15.46 | 867 / 901 |
lung | 100% | 4923.65 | 577 / 578 | 96% | 15.23 | 1109 / 1155 |
stomach | 100% | 1099.13 | 359 / 359 | 94% | 10.01 | 269 / 286 |
pancreas | 98% | 842.55 | 321 / 328 | 93% | 7.16 | 165 / 178 |
bladder | 100% | 1417.71 | 21 / 21 | 90% | 8.30 | 453 / 504 |
uterus | 100% | 1578.52 | 170 / 170 | 89% | 7.08 | 410 / 459 |
prostate | 100% | 1056.36 | 244 / 245 | 89% | 6.09 | 445 / 502 |
thymus | 99% | 833.13 | 645 / 653 | 89% | 6.99 | 539 / 605 |
ovary | 100% | 1360.18 | 180 / 180 | 74% | 4.97 | 318 / 430 |
adrenal gland | 99% | 942.76 | 255 / 258 | 75% | 4.87 | 172 / 230 |
liver | 97% | 787.11 | 220 / 226 | 60% | 3.32 | 245 / 406 |
spleen | 100% | 1746.54 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.93 | 1 / 1 |
adipose | 100% | 1418.87 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1271.39 | 1324 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.42 | 44 / 45 |
eye | 0% | 0 | 0 / 0 | 93% | 12.02 | 74 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 7.04 | 26 / 29 |
heart | 80% | 512.21 | 693 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 79% | 722.57 | 738 / 929 | 0% | 0 | 0 / 0 |
muscle | 54% | 278.07 | 434 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000422 | Biological process | autophagy of mitochondrion |
GO_0015031 | Biological process | protein transport |
GO_0034727 | Biological process | piecemeal microautophagy of the nucleus |
GO_0061709 | Biological process | reticulophagy |
GO_2000786 | Biological process | positive regulation of autophagosome assembly |
GO_0032456 | Biological process | endocytic recycling |
GO_0031901 | Cellular component | early endosome membrane |
GO_0000407 | Cellular component | phagophore assembly site |
GO_0005769 | Cellular component | early endosome |
GO_0005515 | Molecular function | protein binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
Gene name | SNX30 |
Protein name | Sorting nexin family member 30 Sorting nexin-30 |
Synonyms | |
Description | FUNCTION: Involved in the regulation of endocytosis and in several stages of intracellular trafficking . Together with SNX4, involved in autophagosome assembly . . |
Accessions | ENST00000416585.1 Q5VWJ9 H0Y496 ENST00000374232.8 |