Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 34% ± 19% | |
type II pneumocyte | 10 studies | 49% ± 26% | |
astrocyte | 10 studies | 27% ± 11% | |
oligodendrocyte precursor cell | 8 studies | 28% ± 12% | |
endothelial cell of lymphatic vessel | 7 studies | 40% ± 16% | |
GABAergic neuron | 7 studies | 38% ± 20% | |
glutamatergic neuron | 6 studies | 42% ± 22% | |
interneuron | 6 studies | 35% ± 22% | |
type I pneumocyte | 6 studies | 43% ± 12% | |
B cell | 5 studies | 26% ± 11% | |
ciliated cell | 5 studies | 24% ± 12% | |
microglial cell | 4 studies | 26% ± 6% | |
pericyte | 4 studies | 26% ± 15% | |
club cell | 4 studies | 32% ± 10% | |
GABAergic interneuron | 3 studies | 21% ± 5% | |
granule cell | 3 studies | 29% ± 6% | |
plasma cell | 3 studies | 27% ± 7% | |
mesothelial cell | 3 studies | 27% ± 7% | |
Mueller cell | 3 studies | 24% ± 12% | |
retinal cone cell | 3 studies | 36% ± 14% | |
basal cell | 3 studies | 28% ± 10% | |
retinal pigment epithelial cell | 3 studies | 48% ± 17% | |
ependymal cell | 3 studies | 33% ± 12% | |
epithelial cell | 3 studies | 42% ± 12% | |
fibroblast | 3 studies | 40% ± 23% | |
macrophage | 3 studies | 27% ± 10% | |
oligodendrocyte | 3 studies | 25% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1258.89 | 245 / 245 | 100% | 24.89 | 500 / 502 |
esophagus | 100% | 1022.91 | 1444 / 1445 | 99% | 9.58 | 182 / 183 |
pancreas | 100% | 775.82 | 327 / 328 | 99% | 10.23 | 176 / 178 |
breast | 100% | 1220.39 | 459 / 459 | 98% | 15.99 | 1096 / 1118 |
lung | 100% | 2896.59 | 577 / 578 | 98% | 16.47 | 1132 / 1155 |
brain | 98% | 1305.26 | 2596 / 2642 | 99% | 9.72 | 698 / 705 |
intestine | 100% | 1580.33 | 966 / 966 | 97% | 12.10 | 512 / 527 |
thymus | 100% | 1785.38 | 653 / 653 | 96% | 47.73 | 582 / 605 |
skin | 100% | 1185.96 | 1807 / 1809 | 96% | 17.85 | 454 / 472 |
adrenal gland | 100% | 964.61 | 258 / 258 | 94% | 10.76 | 217 / 230 |
bladder | 100% | 1196.57 | 21 / 21 | 94% | 10.06 | 473 / 504 |
kidney | 100% | 1220.15 | 89 / 89 | 94% | 10.84 | 843 / 901 |
uterus | 100% | 1148.78 | 170 / 170 | 93% | 8.76 | 427 / 459 |
stomach | 100% | 799.35 | 359 / 359 | 92% | 10.59 | 263 / 286 |
ovary | 100% | 1060.54 | 180 / 180 | 84% | 5.93 | 362 / 430 |
liver | 99% | 565.92 | 224 / 226 | 74% | 5.59 | 299 / 406 |
adipose | 100% | 1183.61 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1330.05 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1732.42 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 973.65 | 802 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 12.94 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 96% | 8.34 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 95% | 30.00 | 76 / 80 |
heart | 95% | 823.44 | 815 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 32% | 2144.39 | 297 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0032801 | Biological process | receptor catabolic process |
GO_0030512 | Biological process | negative regulation of transforming growth factor beta receptor signaling pathway |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0010008 | Cellular component | endosome membrane |
GO_0005768 | Cellular component | endosome |
GO_0035091 | Molecular function | phosphatidylinositol binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | SNX25 |
Protein name | Sorting nexin-25 Sorting nexin 25 |
Synonyms | MSTP043 |
Description | FUNCTION: May be involved in several stages of intracellular trafficking. . |
Accessions | Q9H3E2 H0Y9R5 ENST00000652585.2 ENST00000504273.5 [Q9H3E2-1] ENST00000264694.13 [Q9H3E2-1] ENST00000504959.5 ENST00000618785.4 [Q9H3E2-2] A0A494C0S0 |