Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 20% ± 5% | |
natural killer cell | 7 studies | 17% ± 2% | |
CD16-positive, CD56-dim natural killer cell, human | 6 studies | 19% ± 2% | |
macrophage | 5 studies | 20% ± 2% | |
classical monocyte | 4 studies | 18% ± 1% | |
conventional dendritic cell | 4 studies | 23% ± 6% | |
neuron | 4 studies | 22% ± 6% | |
retinal ganglion cell | 4 studies | 61% ± 30% | |
CD8-positive, alpha-beta T cell | 4 studies | 17% ± 1% | |
memory B cell | 4 studies | 17% ± 1% | |
B cell | 4 studies | 19% ± 2% | |
regulatory T cell | 4 studies | 18% ± 2% | |
pancreatic A cell | 3 studies | 30% ± 8% | |
naive B cell | 3 studies | 17% ± 1% | |
effector CD8-positive, alpha-beta T cell | 3 studies | 16% ± 1% | |
exhausted T cell | 3 studies | 18% ± 1% | |
dendritic cell | 3 studies | 23% ± 4% | |
gamma-delta T cell | 3 studies | 16% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 792.62 | 180 / 180 | 100% | 48.10 | 430 / 430 |
skin | 100% | 1977.40 | 1808 / 1809 | 100% | 106.24 | 472 / 472 |
thymus | 100% | 1363.21 | 652 / 653 | 100% | 71.03 | 605 / 605 |
brain | 100% | 3107.00 | 2641 / 2642 | 100% | 98.30 | 704 / 705 |
adrenal gland | 100% | 1312.31 | 258 / 258 | 100% | 103.74 | 229 / 230 |
uterus | 100% | 1071.91 | 170 / 170 | 99% | 38.21 | 456 / 459 |
prostate | 100% | 1158.09 | 245 / 245 | 99% | 42.51 | 498 / 502 |
kidney | 100% | 1026.78 | 89 / 89 | 99% | 32.26 | 889 / 901 |
breast | 100% | 998.71 | 459 / 459 | 98% | 54.83 | 1100 / 1118 |
bladder | 100% | 1157.86 | 21 / 21 | 97% | 44.42 | 490 / 504 |
lung | 100% | 1442.34 | 576 / 578 | 97% | 39.63 | 1118 / 1155 |
intestine | 99% | 957.51 | 953 / 966 | 97% | 30.15 | 512 / 527 |
esophagus | 100% | 1064.19 | 1444 / 1445 | 91% | 24.55 | 167 / 183 |
stomach | 96% | 634.70 | 346 / 359 | 94% | 27.82 | 269 / 286 |
liver | 86% | 473.95 | 195 / 226 | 96% | 29.87 | 388 / 406 |
pancreas | 78% | 387.84 | 255 / 328 | 98% | 44.40 | 175 / 178 |
eye | 0% | 0 | 0 / 0 | 100% | 116.35 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 59.24 | 29 / 29 |
spleen | 100% | 1475.48 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.02 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 99.59 | 1 / 1 |
adipose | 99% | 907.32 | 1194 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 996.64 | 1317 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 871.84 | 846 / 861 | 0% | 0 | 0 / 0 |
muscle | 96% | 856.25 | 770 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 811.20 | 886 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016020 | Cellular component | membrane |
Gene name | SMIM29 |
Protein name | Alternative protein C6orf1 Small integral membrane protein 29 Small integral membrane protein 29 (Protein LBH) |
Synonyms | LBH C6orf1 |
Description | |
Accessions | ENST00000394990.8 [Q86T20-2] Q86T20 ENST00000468145.1 [Q86T20-2] L8E8G6 A0A2U3TZT1 ENST00000637920.1 ENST00000476320.6 [Q86T20-1] ENST00000413013.6 G8JLJ3 ENST00000481533.5 [Q86T20-1] ENST00000636500.1 |