Name | Number of supported studies | Average coverage | |
---|---|---|---|
non-classical monocyte | 20 studies | 29% ± 10% | |
classical monocyte | 18 studies | 25% ± 8% | |
conventional dendritic cell | 17 studies | 29% ± 9% | |
macrophage | 16 studies | 26% ± 9% | |
monocyte | 12 studies | 31% ± 11% | |
plasmacytoid dendritic cell | 7 studies | 26% ± 8% | |
goblet cell | 6 studies | 26% ± 10% | |
endothelial cell | 5 studies | 24% ± 6% | |
myeloid cell | 5 studies | 31% ± 8% | |
epithelial cell | 5 studies | 32% ± 12% | |
alveolar macrophage | 5 studies | 26% ± 6% | |
dendritic cell | 5 studies | 32% ± 15% | |
T follicular helper cell | 4 studies | 41% ± 14% | |
enterocyte | 4 studies | 20% ± 1% | |
mucus secreting cell | 3 studies | 32% ± 6% | |
luminal cell of prostate epithelium | 3 studies | 28% ± 8% | |
GABAergic neuron | 3 studies | 23% ± 6% | |
enteroendocrine cell | 3 studies | 24% ± 9% | |
intestinal crypt stem cell | 3 studies | 19% ± 3% | |
hepatocyte | 3 studies | 51% ± 22% | |
connective tissue cell | 3 studies | 20% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 24% ± 6% | |
CD4-positive, alpha-beta cytotoxic T cell | 3 studies | 21% ± 1% | |
CD8-positive, alpha-beta T cell | 3 studies | 19% ± 4% | |
microglial cell | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 2236.65 | 653 / 653 | 100% | 77.88 | 604 / 605 |
liver | 100% | 1985.28 | 226 / 226 | 100% | 92.25 | 405 / 406 |
lung | 100% | 1033.08 | 577 / 578 | 99% | 68.21 | 1149 / 1155 |
prostate | 99% | 1651.63 | 243 / 245 | 100% | 208.22 | 502 / 502 |
stomach | 100% | 1060.15 | 358 / 359 | 99% | 53.90 | 284 / 286 |
pancreas | 100% | 896.58 | 328 / 328 | 98% | 71.25 | 175 / 178 |
uterus | 100% | 601.79 | 170 / 170 | 97% | 55.99 | 445 / 459 |
kidney | 100% | 1156.81 | 89 / 89 | 95% | 57.60 | 856 / 901 |
adrenal gland | 100% | 1861.97 | 258 / 258 | 93% | 63.51 | 213 / 230 |
breast | 100% | 656.54 | 457 / 459 | 92% | 42.43 | 1024 / 1118 |
ovary | 100% | 696.27 | 180 / 180 | 90% | 30.19 | 389 / 430 |
intestine | 90% | 678.45 | 871 / 966 | 100% | 61.10 | 525 / 527 |
esophagus | 95% | 424.56 | 1367 / 1445 | 89% | 31.82 | 162 / 183 |
bladder | 90% | 338.90 | 19 / 21 | 91% | 46.70 | 461 / 504 |
skin | 98% | 498.60 | 1781 / 1809 | 72% | 22.57 | 341 / 472 |
brain | 58% | 219.70 | 1535 / 2642 | 77% | 19.17 | 541 / 705 |
lymph node | 0% | 0 | 0 / 0 | 100% | 102.88 | 29 / 29 |
spleen | 100% | 1695.80 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.75 | 1 / 1 |
blood vessel | 98% | 594.96 | 1313 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 490.39 | 1184 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 974.98 | 842 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 45.18 | 43 / 45 |
peripheral blood | 95% | 883.36 | 882 / 929 | 0% | 0 | 0 / 0 |
muscle | 64% | 217.79 | 512 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 40% | 7.09 | 32 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | SMCO4 |
Protein name | Single-pass membrane and coiled-coil domain-containing protein 4 Single-pass membrane and coiled-coil domain-containing protein 4 (Protein FN5) |
Synonyms | C11orf75 FN5 |
Description | |
Accessions | ENST00000596676.2 ENST00000527149.5 Q9NRQ5 ENST00000529714.5 ENST00000298966.7 ENST00000526869.1 E9PSB8 E9PQ76 ENST00000525141.1 |