Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of lymphatic vessel | 10 studies | 29% ± 9% | |
endothelial cell | 9 studies | 30% ± 11% | |
epithelial cell | 8 studies | 30% ± 10% | |
goblet cell | 5 studies | 30% ± 11% | |
respiratory goblet cell | 4 studies | 21% ± 5% | |
secretory cell | 4 studies | 22% ± 9% | |
squamous epithelial cell | 4 studies | 37% ± 18% | |
endothelial cell of vascular tree | 4 studies | 19% ± 3% | |
placental villous trophoblast | 3 studies | 45% ± 35% | |
club cell | 3 studies | 19% ± 3% | |
intestinal crypt stem cell | 3 studies | 22% ± 2% | |
transit amplifying cell | 3 studies | 20% ± 3% | |
memory B cell | 3 studies | 18% ± 1% | |
basal cell | 3 studies | 38% ± 16% |
Insufficient scRNA-seq data for expression of SMAGP at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 904.86 | 578 / 578 | 95% | 21.24 | 1098 / 1155 |
stomach | 96% | 920.90 | 343 / 359 | 99% | 49.29 | 282 / 286 |
bladder | 95% | 607.19 | 20 / 21 | 96% | 35.42 | 483 / 504 |
kidney | 100% | 983.84 | 89 / 89 | 90% | 15.89 | 812 / 901 |
uterus | 99% | 445.24 | 168 / 170 | 91% | 22.86 | 417 / 459 |
pancreas | 94% | 454.88 | 308 / 328 | 96% | 29.59 | 170 / 178 |
esophagus | 87% | 2253.94 | 1251 / 1445 | 98% | 33.09 | 180 / 183 |
breast | 100% | 808.69 | 459 / 459 | 84% | 12.18 | 942 / 1118 |
intestine | 82% | 1276.81 | 794 / 966 | 99% | 53.52 | 523 / 527 |
ovary | 100% | 543.57 | 180 / 180 | 79% | 12.15 | 339 / 430 |
prostate | 98% | 531.04 | 241 / 245 | 60% | 4.71 | 300 / 502 |
thymus | 99% | 434.85 | 647 / 653 | 56% | 4.69 | 336 / 605 |
adrenal gland | 100% | 840.32 | 257 / 258 | 30% | 5.92 | 70 / 230 |
liver | 76% | 246.19 | 172 / 226 | 53% | 7.66 | 215 / 406 |
skin | 100% | 1543.74 | 1809 / 1809 | 19% | 3.34 | 92 / 472 |
spleen | 100% | 638.50 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.32 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 29.81 | 1 / 1 |
adipose | 100% | 645.52 | 1198 / 1204 | 0% | 0 | 0 / 0 |
heart | 67% | 185.33 | 580 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 59% | 194.82 | 787 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 39% | 111.21 | 363 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 3.66 | 6 / 29 |
brain | 6% | 13.19 | 164 / 2642 | 7% | 0.63 | 49 / 705 |
muscle | 9% | 20.36 | 76 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 9% | 0.67 | 7 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030054 | Cellular component | cell junction |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005886 | Cellular component | plasma membrane |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SMAGP |
Protein name | Small cell adhesion glycoprotein Small cell adhesion glycoprotein (Small transmembrane and glycosylated protein) |
Synonyms | |
Description | FUNCTION: May play a role in epithelial cell-cell contacts. May play a role in tumor invasiveness and metastasis formation. . |
Accessions | ENST00000380103.4 ENST00000605627.1 ENST00000604188.1 ENST00000398453.7 ENST00000603798.6 ENST00000603864.5 Q0VAQ4 A0A0A0MRX0 S4R3E1 S4R466 ENST00000603838.5 ENST00000605426.5 S4R405 |