Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 8 studies | 19% ± 4% | |
respiratory goblet cell | 6 studies | 34% ± 11% | |
club cell | 5 studies | 23% ± 4% | |
epithelial cell | 5 studies | 27% ± 9% | |
alveolar macrophage | 5 studies | 25% ± 7% | |
myeloid cell | 4 studies | 24% ± 3% | |
secretory cell | 3 studies | 31% ± 6% | |
non-classical monocyte | 3 studies | 21% ± 6% | |
endothelial cell | 3 studies | 25% ± 1% | |
ciliated cell | 3 studies | 19% ± 2% | |
GABAergic neuron | 3 studies | 27% ± 3% | |
glutamatergic neuron | 3 studies | 32% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 2175.70 | 359 / 359 | 100% | 47.38 | 286 / 286 |
lung | 100% | 2639.75 | 577 / 578 | 100% | 45.49 | 1154 / 1155 |
breast | 100% | 1796.84 | 459 / 459 | 100% | 52.03 | 1115 / 1118 |
esophagus | 99% | 1575.76 | 1437 / 1445 | 100% | 46.87 | 183 / 183 |
pancreas | 100% | 1374.47 | 328 / 328 | 99% | 29.10 | 177 / 178 |
liver | 100% | 6188.20 | 226 / 226 | 99% | 54.29 | 403 / 406 |
intestine | 100% | 1978.44 | 963 / 966 | 99% | 47.30 | 524 / 527 |
prostate | 100% | 2397.06 | 244 / 245 | 99% | 62.33 | 499 / 502 |
skin | 100% | 4422.93 | 1809 / 1809 | 99% | 53.46 | 467 / 472 |
uterus | 99% | 1170.08 | 169 / 170 | 99% | 36.26 | 453 / 459 |
brain | 98% | 1024.44 | 2577 / 2642 | 100% | 32.13 | 703 / 705 |
bladder | 100% | 1340.29 | 21 / 21 | 97% | 35.49 | 487 / 504 |
adrenal gland | 100% | 3182.78 | 258 / 258 | 95% | 101.32 | 219 / 230 |
kidney | 100% | 1969.13 | 89 / 89 | 94% | 27.63 | 849 / 901 |
thymus | 100% | 1279.23 | 650 / 653 | 93% | 19.10 | 562 / 605 |
ovary | 98% | 1025.78 | 177 / 180 | 93% | 22.67 | 400 / 430 |
adipose | 100% | 1768.79 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1551.72 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 38.59 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.14 | 1 / 1 |
blood vessel | 99% | 1351.21 | 1326 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1942.97 | 903 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 32.04 | 27 / 29 |
heart | 91% | 1071.08 | 780 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 19.10 | 70 / 80 |
muscle | 58% | 348.99 | 462 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015677 | Biological process | copper ion import |
GO_0001525 | Biological process | angiogenesis |
GO_0006825 | Biological process | copper ion transport |
GO_1902601 | Biological process | silver ion transmembrane transport |
GO_0051649 | Biological process | establishment of localization in cell |
GO_0051259 | Biological process | protein complex oligomerization |
GO_0042908 | Biological process | xenobiotic transport |
GO_0015679 | Biological process | plasma membrane copper ion transport |
GO_0036324 | Biological process | vascular endothelial growth factor receptor-2 signaling pathway |
GO_0006878 | Biological process | intracellular copper ion homeostasis |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0031901 | Cellular component | early endosome membrane |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0014704 | Cellular component | intercalated disc |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0015080 | Molecular function | silver ion transmembrane transporter activity |
GO_0005375 | Molecular function | copper ion transmembrane transporter activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0042910 | Molecular function | xenobiotic transmembrane transporter activity |
GO_0005507 | Molecular function | copper ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SLC31A1 |
Protein name | High affinity copper uptake protein 1 (Copper transporter 1) (hCTR1) (Solute carrier family 31 member 1) [Cleaved into: Truncated CTR1 form] Copper transport protein |
Synonyms | CTR1 COPT1 |
Description | FUNCTION: [High affinity copper uptake protein 1]: Uniporter that mediates the transport of copper(1+) from the extracellular space to the cytoplasm, across the plasma membrane and delivers directly copper(1+) to specific chaperone such as ATOX1, via a copper(1+)- mediated transient interaction between the C-terminal domain and a copper(1+) chaperone, thus controlling intracellular copper(1+) levels . May function in copper(1+) import from the apical membrane thus may drive intestinal copper absorption (By similarity). The copper(1+) transport mechanism is sodium-independent, saturable and of high-affinity . Also mediates the uptake of silver(1+) . May function in the influx of the platinum-containing chemotherapeutic agents . The platinum-containing chemotherapeutic agents uptake is saturable (By similarity). In vitro, mediates the transport of cadmium(2+) into cells . Also participates in the first step of copper(2+) acquisition by cells through a direct transfer of copper(2+) from copper(2+) carriers in blood, such as ALB to the N-terminal domain of SLC31A1, leading to copper(2+) reduction and probably followed by copper(1+) stabilization . In addition, functions as a redox sensor to promote angiogenesis in endothelial cells, in a copper(1+) transport independent manner, by transmitting the VEGF-induced ROS signal through a sulfenylation at Cys-189 leadin g to a subsequent disulfide bond formation between SLC31A1 and KDR . The SLC31A1-KDR complex is then co-internalized to early endosomes, driving a sustained VEGFR2 signaling . .; FUNCTION: [Truncated CTR1 form]: Mobilizes copper(1+) out of the endosomal compartment, making copper(1+) available for export out of the cells. . FUNCTION: Mobilizes copper(1+) out of the endosomal compartment, making copper(1+) available for export out of the cells. . |
Accessions | ENST00000374212.5 O15431 Q6P708 |