SLC24A1 | OmnibusX

Name	Number of supported studies	Average coverage
endothelial cell of lymphatic vessel	10 studies	27% ± 11%	Explore
retinal rod cell	8 studies	45% ± 12%	Explore

Name	Number of supported studies	Average coverage
eye	6 studies	30% ± 12%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	374.84	1440 / 1445	99%	5.22	182 / 183
skin	100%	769.30	1809 / 1809	99%	7.49	466 / 472
stomach	100%	347.99	359 / 359	99%	4.51	282 / 286
intestine	100%	459.84	965 / 966	99%	4.15	520 / 527
kidney	100%	567.34	89 / 89	99%	6.17	888 / 901
breast	100%	798.37	459 / 459	98%	7.68	1101 / 1118
lung	100%	610.55	576 / 578	99%	4.69	1141 / 1155
brain	100%	382.97	2631 / 2642	99%	3.67	696 / 705
thymus	100%	979.47	653 / 653	98%	6.34	594 / 605
prostate	100%	577.75	245 / 245	98%	5.37	492 / 502
pancreas	98%	307.35	323 / 328	98%	4.05	174 / 178
bladder	100%	565.90	21 / 21	96%	3.56	484 / 504
ovary	100%	840.76	180 / 180	95%	4.03	410 / 430
uterus	100%	728.08	170 / 170	91%	3.25	417 / 459
adrenal gland	100%	562.43	258 / 258	87%	3.22	200 / 230
liver	96%	234.24	216 / 226	73%	2.05	298 / 406
adipose	100%	693.75	1204 / 1204	0%	0	0 / 0
spleen	100%	628.54	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	1.43	1 / 1
blood vessel	100%	473.79	1334 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	98%	6.41	78 / 80
tonsil	0%	0	0 / 0	93%	3.22	42 / 45
lymph node	0%	0	0 / 0	83%	1.90	24 / 29
heart	80%	165.11	692 / 861	0%	0	0 / 0
muscle	54%	85.32	435 / 803	0%	0	0 / 0
peripheral blood	49%	221.68	455 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0007601	Biological process	visual perception
GO_0006811	Biological process	monoatomic ion transport
GO_0098703	Biological process	calcium ion import across plasma membrane
GO_0006874	Biological process	intracellular calcium ion homeostasis
GO_0060292	Biological process	long-term synaptic depression
GO_0060291	Biological process	long-term synaptic potentiation
GO_0071805	Biological process	potassium ion transmembrane transport
GO_0009642	Biological process	response to light intensity
GO_0006816	Biological process	calcium ion transport
GO_0035725	Biological process	sodium ion transmembrane transport
GO_0070588	Biological process	calcium ion transmembrane transport
GO_0019867	Cellular component	outer membrane
GO_0005886	Cellular component	plasma membrane
GO_0016020	Cellular component	membrane
GO_0043025	Cellular component	neuronal cell body
GO_0009986	Cellular component	cell surface
GO_0015293	Molecular function	symporter activity
GO_0008273	Molecular function	calcium, potassium:sodium antiporter activity
GO_0005515	Molecular function	protein binding
GO_0005262	Molecular function	calcium channel activity

Gene name	SLC24A1
Protein name	Sodium/potassium/calcium exchanger 1 (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (Solute carrier family 24 member 1) Solute carrier family 24 member 1
Synonyms	NCKX1 KIAA0702
Description	FUNCTION: Calcium, potassium:sodium antiporter that transports 1 Ca(2+) and 1 K(+) in exchange for 4 Na(+) . Critical component of the visual transduction cascade, controlling the calcium concentration of outer segments during light and darkness . Light causes a rapid lowering of cytosolic free calcium in the outer segment of both retinal rod and cone photoreceptors and the light-induced lowering of calcium is caused by extrusion via this protein which plays a key role in the process of light adaptation . .
Accessions	O60721 ENST00000544319.6 H0YH06 ENST00000546330.1 [O60721-2] F5H127 ENST00000505666.2 ENST00000261892.11 [O60721-1] ENST00000399033.8 [O60721-3] ENST00000339868.10 [O60721-3] ENST00000537259.5 F5H483

SLC24A1 report