Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 16 studies | 52% ± 21% | |
fibroblast | 15 studies | 31% ± 13% | |
oligodendrocyte | 14 studies | 37% ± 15% | |
oligodendrocyte precursor cell | 14 studies | 72% ± 13% | |
glutamatergic neuron | 11 studies | 50% ± 20% | |
GABAergic neuron | 9 studies | 42% ± 18% | |
adipocyte | 8 studies | 32% ± 8% | |
smooth muscle cell | 7 studies | 36% ± 15% | |
neuron | 6 studies | 41% ± 24% | |
interneuron | 6 studies | 49% ± 18% | |
cardiac muscle cell | 6 studies | 82% ± 14% | |
retinal cone cell | 6 studies | 53% ± 26% | |
endothelial cell | 5 studies | 41% ± 13% | |
microglial cell | 5 studies | 40% ± 21% | |
retina horizontal cell | 4 studies | 52% ± 18% | |
endothelial cell of lymphatic vessel | 4 studies | 27% ± 2% | |
myofibroblast cell | 4 studies | 23% ± 6% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 62% ± 6% | |
GABAergic interneuron | 3 studies | 32% ± 4% | |
Purkinje cell | 3 studies | 56% ± 32% | |
muscle cell | 3 studies | 26% ± 11% | |
ependymal cell | 3 studies | 34% ± 19% | |
melanocyte | 3 studies | 39% ± 19% | |
connective tissue cell | 3 studies | 28% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 94% | 2170.96 | 170 / 180 | 55% | 2.86 | 237 / 430 |
thymus | 89% | 1494.92 | 582 / 653 | 53% | 5.65 | 318 / 605 |
breast | 61% | 608.75 | 278 / 459 | 81% | 7.05 | 906 / 1118 |
lung | 90% | 1367.45 | 518 / 578 | 51% | 3.01 | 590 / 1155 |
prostate | 68% | 900.34 | 166 / 245 | 73% | 4.94 | 365 / 502 |
skin | 43% | 636.11 | 782 / 1809 | 95% | 33.24 | 449 / 472 |
adrenal gland | 84% | 1018.31 | 218 / 258 | 46% | 3.37 | 106 / 230 |
brain | 48% | 475.73 | 1266 / 2642 | 76% | 5.99 | 535 / 705 |
esophagus | 69% | 2541.91 | 998 / 1445 | 54% | 3.56 | 99 / 183 |
uterus | 85% | 1969.54 | 145 / 170 | 35% | 3.84 | 159 / 459 |
intestine | 74% | 1850.17 | 716 / 966 | 41% | 2.30 | 217 / 527 |
bladder | 81% | 1351.62 | 17 / 21 | 27% | 1.46 | 136 / 504 |
eye | 0% | 0 | 0 / 0 | 100% | 48.08 | 80 / 80 |
stomach | 43% | 688.05 | 154 / 359 | 57% | 4.46 | 163 / 286 |
blood vessel | 100% | 5530.27 | 1330 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 5777.50 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 5667.75 | 818 / 861 | 0% | 0 | 0 / 0 |
pancreas | 1% | 4.24 | 2 / 328 | 70% | 5.18 | 124 / 178 |
adipose | 62% | 708.66 | 749 / 1204 | 0% | 0 | 0 / 0 |
kidney | 6% | 35.13 | 5 / 89 | 24% | 1.23 | 219 / 901 |
tonsil | 0% | 0 | 0 / 0 | 20% | 1.18 | 9 / 45 |
spleen | 14% | 101.04 | 33 / 241 | 0% | 0 | 0 / 0 |
liver | 2% | 13.68 | 5 / 226 | 8% | 0.35 | 33 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0055074 | Biological process | calcium ion homeostasis |
GO_0048738 | Biological process | cardiac muscle tissue development |
GO_0055013 | Biological process | cardiac muscle cell development |
GO_0060047 | Biological process | heart contraction |
GO_0019722 | Biological process | calcium-mediated signaling |
GO_0086003 | Biological process | cardiac muscle cell contraction |
GO_0031503 | Biological process | protein-containing complex localization |
GO_0007517 | Biological process | muscle organ development |
GO_0060977 | Biological process | coronary vasculature morphogenesis |
GO_0016012 | Cellular component | sarcoglycan complex |
GO_0042383 | Cellular component | sarcolemma |
GO_0005856 | Cellular component | cytoskeleton |
GO_0016010 | Cellular component | dystrophin-associated glycoprotein complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0016529 | Cellular component | sarcoplasmic reticulum |
Gene name | SGCD |
Protein name | Delta-sarcoglycan (Delta-SG) (35 kDa dystrophin-associated glycoprotein) (35DAG) Sarcoglycan delta |
Synonyms | |
Description | FUNCTION: Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix. |
Accessions | E5RI34 A0A7R6M8P0 ENST00000435422.7 [Q92629-1] ENST00000337851.9 [Q92629-2] ENST00000524347.2 A0A7R6M8G4 Q92629 ENST00000517913.5 [Q92629-3] |