Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 17 studies | 42% ± 11% | |
non-classical monocyte | 10 studies | 29% ± 16% | |
macrophage | 10 studies | 23% ± 7% | |
dendritic cell | 8 studies | 41% ± 27% | |
conventional dendritic cell | 8 studies | 26% ± 15% | |
monocyte | 8 studies | 22% ± 6% | |
natural killer cell | 7 studies | 18% ± 3% | |
B cell | 7 studies | 24% ± 9% | |
endothelial cell | 7 studies | 22% ± 3% | |
endothelial cell of lymphatic vessel | 6 studies | 18% ± 2% | |
fibroblast | 6 studies | 19% ± 2% | |
CD16-positive, CD56-dim natural killer cell, human | 6 studies | 19% ± 2% | |
epithelial cell | 6 studies | 34% ± 17% | |
classical monocyte | 5 studies | 29% ± 12% | |
myeloid cell | 5 studies | 25% ± 10% | |
squamous epithelial cell | 4 studies | 35% ± 23% | |
basal cell | 4 studies | 18% ± 2% | |
ciliated cell | 4 studies | 28% ± 15% | |
microglial cell | 4 studies | 26% ± 7% | |
naive B cell | 3 studies | 19% ± 4% | |
abnormal cell | 3 studies | 21% ± 3% | |
oligodendrocyte | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3937.54 | 1445 / 1445 | 100% | 40.82 | 183 / 183 |
lung | 100% | 4606.46 | 578 / 578 | 100% | 30.75 | 1155 / 1155 |
ovary | 100% | 7168.04 | 180 / 180 | 100% | 31.65 | 430 / 430 |
intestine | 100% | 4295.15 | 966 / 966 | 100% | 22.12 | 525 / 527 |
skin | 100% | 6148.36 | 1809 / 1809 | 100% | 32.87 | 470 / 472 |
breast | 100% | 3874.75 | 459 / 459 | 100% | 34.07 | 1113 / 1118 |
uterus | 100% | 8683.55 | 170 / 170 | 99% | 30.03 | 456 / 459 |
prostate | 100% | 3583.62 | 245 / 245 | 99% | 18.61 | 498 / 502 |
stomach | 100% | 2672.21 | 358 / 359 | 99% | 28.54 | 284 / 286 |
thymus | 100% | 3732.25 | 653 / 653 | 99% | 18.98 | 598 / 605 |
bladder | 100% | 2877.71 | 21 / 21 | 98% | 21.14 | 496 / 504 |
kidney | 100% | 3248.83 | 89 / 89 | 97% | 28.50 | 873 / 901 |
pancreas | 98% | 1824.57 | 320 / 328 | 99% | 21.45 | 176 / 178 |
liver | 100% | 2445.57 | 226 / 226 | 96% | 16.44 | 390 / 406 |
adrenal gland | 100% | 3194.18 | 258 / 258 | 92% | 12.50 | 212 / 230 |
brain | 81% | 1687.44 | 2128 / 2642 | 99% | 21.73 | 699 / 705 |
adipose | 100% | 3604.77 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.27 | 29 / 29 |
spleen | 100% | 5085.64 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.42 | 1 / 1 |
blood vessel | 100% | 4331.13 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 1614.65 | 824 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 11.83 | 69 / 80 |
peripheral blood | 86% | 2828.36 | 801 / 929 | 0% | 0 | 0 / 0 |
muscle | 79% | 1061.86 | 638 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0008150 | Biological process | biological_process |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0012505 | Cellular component | endomembrane system |
GO_0070062 | Cellular component | extracellular exosome |
GO_0016020 | Cellular component | membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | SFT2D2 |
Protein name | Vesicle transport protein SFT2B (SFT2 domain-containing protein 2) Vesicle transport protein |
Synonyms | UNQ512/PRO1027 |
Description | FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. . FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. . |
Accessions | ENST00000367829.5 Q5TIH2 ENST00000630869.1 ENST00000271375.7 O95562 |