Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 43 studies | 55% ± 25% | |
plasmacytoid dendritic cell | 29 studies | 76% ± 19% | |
connective tissue cell | 18 studies | 51% ± 26% | |
basal cell | 14 studies | 50% ± 19% | |
conventional dendritic cell | 14 studies | 28% ± 10% | |
dendritic cell | 9 studies | 34% ± 13% | |
smooth muscle cell | 9 studies | 34% ± 15% | |
ciliated cell | 8 studies | 26% ± 9% | |
macrophage | 7 studies | 33% ± 15% | |
adipocyte | 7 studies | 38% ± 19% | |
pericyte | 7 studies | 41% ± 16% | |
epithelial cell | 6 studies | 26% ± 8% | |
retinal cone cell | 6 studies | 48% ± 27% | |
myeloid cell | 6 studies | 28% ± 4% | |
club cell | 5 studies | 27% ± 10% | |
ionocyte | 5 studies | 35% ± 4% | |
retinal pigment epithelial cell | 5 studies | 87% ± 13% | |
adventitial cell | 5 studies | 70% ± 29% | |
secretory cell | 4 studies | 36% ± 10% | |
neuroendocrine cell | 4 studies | 59% ± 25% | |
hepatocyte | 4 studies | 55% ± 20% | |
placental villous trophoblast | 3 studies | 75% ± 24% | |
microglial cell | 3 studies | 26% ± 7% | |
myofibroblast cell | 3 studies | 51% ± 31% | |
endothelial cell | 3 studies | 24% ± 4% | |
mononuclear phagocyte | 3 studies | 39% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 26283.10 | 226 / 226 | 96% | 668.82 | 388 / 406 |
breast | 100% | 37176.05 | 458 / 459 | 92% | 213.96 | 1032 / 1118 |
skin | 96% | 15289.86 | 1731 / 1809 | 88% | 577.34 | 417 / 472 |
lung | 94% | 11415.18 | 541 / 578 | 88% | 163.33 | 1012 / 1155 |
prostate | 100% | 17391.41 | 244 / 245 | 81% | 93.42 | 405 / 502 |
pancreas | 72% | 4472.02 | 235 / 328 | 93% | 307.89 | 166 / 178 |
bladder | 100% | 17153.05 | 21 / 21 | 59% | 87.75 | 299 / 504 |
uterus | 100% | 27796.86 | 170 / 170 | 58% | 111.12 | 266 / 459 |
ovary | 100% | 29055.62 | 180 / 180 | 57% | 85.39 | 246 / 430 |
thymus | 98% | 15429.83 | 643 / 653 | 45% | 111.60 | 274 / 605 |
intestine | 90% | 9268.93 | 870 / 966 | 54% | 65.78 | 282 / 527 |
esophagus | 84% | 8565.46 | 1210 / 1445 | 42% | 45.01 | 76 / 183 |
stomach | 59% | 7173.99 | 213 / 359 | 60% | 79.97 | 173 / 286 |
adipose | 100% | 38712.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 1172.54 | 80 / 80 |
ureter | 0% | 0 | 0 / 0 | 100% | 48.23 | 1 / 1 |
muscle | 100% | 17319.41 | 802 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 133.16 | 28 / 29 |
heart | 95% | 14140.58 | 819 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 93% | 15947.70 | 1245 / 1335 | 0% | 0 | 0 / 0 |
spleen | 88% | 10598.12 | 212 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 124.16 | 37 / 45 |
kidney | 24% | 1778.29 | 21 / 89 | 36% | 56.27 | 328 / 901 |
adrenal gland | 48% | 2884.60 | 123 / 258 | 8% | 15.83 | 19 / 230 |
brain | 7% | 344.25 | 192 / 2642 | 30% | 32.16 | 213 / 705 |
peripheral blood | 1% | 29.98 | 5 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071300 | Biological process | cellular response to retinoic acid |
GO_0071333 | Biological process | cellular response to glucose stimulus |
GO_0071549 | Biological process | cellular response to dexamethasone stimulus |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0010951 | Biological process | negative regulation of endopeptidase activity |
GO_1901652 | Biological process | response to peptide |
GO_0050769 | Biological process | positive regulation of neurogenesis |
GO_0001822 | Biological process | kidney development |
GO_0060041 | Biological process | retina development in camera-type eye |
GO_0046685 | Biological process | response to arsenic-containing substance |
GO_0042698 | Biological process | ovulation cycle |
GO_0010447 | Biological process | response to acidic pH |
GO_0016525 | Biological process | negative regulation of angiogenesis |
GO_0060770 | Biological process | negative regulation of epithelial cell proliferation involved in prostate gland development |
GO_0060767 | Biological process | epithelial cell proliferation involved in prostate gland development |
GO_0010596 | Biological process | negative regulation of endothelial cell migration |
GO_0007614 | Biological process | short-term memory |
GO_0071279 | Biological process | cellular response to cobalt ion |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0043203 | Cellular component | axon hillock |
GO_0070062 | Cellular component | extracellular exosome |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005604 | Cellular component | basement membrane |
GO_0042470 | Cellular component | melanosome |
GO_0004867 | Molecular function | serine-type endopeptidase inhibitor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SERPINF1 |
Protein name | Pigment epithelium-derived factor (PEDF) (Cell proliferation-inducing gene 35 protein) (EPC-1) (Serpin F1) Pigment epithelium-derived factor Serpin family F member 1 |
Synonyms | PIG35 PEDF |
Description | FUNCTION: Neurotrophic protein; induces extensive neuronal differentiation in retinoblastoma cells. Potent inhibitor of angiogenesis. As it does not undergo the S (stressed) to R (relaxed) conformational transition characteristic of active serpins, it exhibits no serine protease inhibitory activity. . |
Accessions | A0A0J9YXF9 A0A0J9YXW2 I3L3Z3 ENST00000632188.1 ENST00000572048.1 I3L2R7 I3L4N7 ENST00000573770.5 ENST00000576406.5 ENST00000570731.5 ENST00000571149.5 ENST00000573763.1 ENST00000632258.1 I3L4F9 ENST00000571360.5 I3L1U4 ENST00000632001.1 P36955 I3L4Z0 ENST00000254722.9 ENST00000633761.1 I3L107 ENST00000577053.1 I3L425 |