Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 4 studies | 23% ± 6% | |
endothelial cell | 3 studies | 21% ± 7% | |
epithelial cell | 3 studies | 17% ± 2% | |
GABAergic neuron | 3 studies | 29% ± 3% | |
glutamatergic neuron | 3 studies | 33% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 25% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 991.02 | 1445 / 1445 | 100% | 19.90 | 183 / 183 |
lung | 100% | 932.35 | 578 / 578 | 100% | 14.49 | 1154 / 1155 |
breast | 100% | 1141.40 | 459 / 459 | 100% | 17.50 | 1114 / 1118 |
ovary | 100% | 1073.19 | 180 / 180 | 100% | 14.10 | 428 / 430 |
bladder | 100% | 1162.38 | 21 / 21 | 99% | 12.24 | 499 / 504 |
uterus | 100% | 1301.50 | 170 / 170 | 99% | 16.40 | 454 / 459 |
stomach | 100% | 735.91 | 359 / 359 | 99% | 13.12 | 282 / 286 |
brain | 99% | 528.86 | 2619 / 2642 | 99% | 9.17 | 698 / 705 |
intestine | 100% | 993.24 | 966 / 966 | 98% | 11.60 | 517 / 527 |
thymus | 100% | 988.71 | 653 / 653 | 98% | 10.14 | 592 / 605 |
pancreas | 99% | 525.49 | 326 / 328 | 98% | 9.95 | 175 / 178 |
prostate | 100% | 1015.96 | 245 / 245 | 97% | 8.63 | 486 / 502 |
skin | 100% | 1332.05 | 1809 / 1809 | 96% | 12.49 | 454 / 472 |
kidney | 100% | 675.51 | 89 / 89 | 94% | 8.61 | 844 / 901 |
adrenal gland | 100% | 748.69 | 258 / 258 | 93% | 7.36 | 215 / 230 |
liver | 100% | 399.15 | 226 / 226 | 67% | 4.33 | 273 / 406 |
adipose | 100% | 1097.66 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1057.98 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 13.53 | 29 / 29 |
spleen | 100% | 1153.34 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.73 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.72 | 1 / 1 |
muscle | 100% | 586.27 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 466.56 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 1011.10 | 863 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 78% | 5.07 | 62 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0097190 | Biological process | apoptotic signaling pathway |
GO_0016925 | Biological process | protein sumoylation |
GO_0006919 | Biological process | activation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0016926 | Biological process | protein desumoylation |
GO_0043488 | Biological process | regulation of mRNA stability |
GO_0006508 | Biological process | proteolysis |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0004175 | Molecular function | endopeptidase activity |
GO_0016929 | Molecular function | deSUMOylase activity |
GO_0005515 | Molecular function | protein binding |
GO_0070139 | Molecular function | SUMO-specific endopeptidase activity |
Gene name | SENP1 |
Protein name | SUMO specific peptidase 1 Sentrin-specific protease 1 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP1) |
Synonyms | |
Description | FUNCTION: Protease that catalyzes two essential functions in the SUMO pathway . The first is the hydrolysis of an alpha-linked peptide bond at the C-terminal end of the small ubiquitin-like modifier (SUMO) propeptides, SUMO1, SUMO2 and SUMO3 leading to the mature form of the proteins. The second is the deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins, by cleaving an epsilon-linked peptide bond between the C-terminal glycine of the mature SUMO and the lysine epsilon-amino group of the target protein. Deconjugates SUMO1 from HIPK2 . Deconjugates SUMO1 from HDAC1 and BHLHE40/DEC1, which decreases its transcriptional repression activity . Deconjugates SUMO1 from CLOCK, which decreases its transcriptional activation activity . Deconjugates SUMO2 from MTA1 . Deconjugates SUMO1 from METTL3 . Desumoylates CCAR2 which decreases its interaction with SIRT1 . Deconjugates SUMO1 from GPS2 . . |
Accessions | ENST00000552189.5 ENST00000549518.6 [Q9P0U3-1] F8VRZ8 ENST00000448372.6 [Q9P0U3-1] F8W0I8 ENST00000551798.1 Q9P0U3 ENST00000549595.5 [Q9P0U3-2] |