Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 17 studies | 35% ± 12% | |
fibroblast | 13 studies | 30% ± 14% | |
pericyte | 13 studies | 21% ± 5% | |
type II pneumocyte | 12 studies | 57% ± 22% | |
type I pneumocyte | 11 studies | 47% ± 19% | |
club cell | 10 studies | 41% ± 18% | |
epithelial cell | 10 studies | 41% ± 15% | |
erythrocyte | 9 studies | 55% ± 17% | |
smooth muscle cell | 8 studies | 24% ± 8% | |
mesothelial cell | 8 studies | 35% ± 13% | |
basal cell | 6 studies | 35% ± 16% | |
ionocyte | 6 studies | 33% ± 9% | |
respiratory goblet cell | 6 studies | 49% ± 19% | |
goblet cell | 6 studies | 23% ± 7% | |
hepatocyte | 6 studies | 44% ± 14% | |
erythroblast | 5 studies | 41% ± 24% | |
intestinal crypt stem cell | 5 studies | 35% ± 16% | |
transit amplifying cell | 5 studies | 31% ± 13% | |
secretory cell | 4 studies | 51% ± 18% | |
myofibroblast cell | 4 studies | 23% ± 6% | |
enterocyte | 4 studies | 34% ± 9% | |
progenitor cell | 4 studies | 49% ± 28% | |
endothelial cell | 4 studies | 26% ± 10% | |
astrocyte | 4 studies | 25% ± 11% | |
duct epithelial cell | 3 studies | 37% ± 21% | |
kidney loop of Henle epithelial cell | 3 studies | 17% ± 2% | |
adipocyte | 3 studies | 24% ± 6% | |
connective tissue cell | 3 studies | 21% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 6977.53 | 244 / 245 | 99% | 95.14 | 495 / 502 |
ovary | 99% | 6424.48 | 179 / 180 | 97% | 121.67 | 416 / 430 |
breast | 100% | 7793.35 | 457 / 459 | 96% | 176.97 | 1071 / 1118 |
liver | 100% | 17323.46 | 226 / 226 | 93% | 183.80 | 379 / 406 |
intestine | 100% | 34372.10 | 962 / 966 | 90% | 236.55 | 475 / 527 |
thymus | 100% | 19968.12 | 653 / 653 | 87% | 163.40 | 527 / 605 |
stomach | 100% | 11966.72 | 358 / 359 | 85% | 164.74 | 244 / 286 |
lung | 99% | 11231.87 | 575 / 578 | 68% | 103.64 | 781 / 1155 |
pancreas | 80% | 1963.02 | 261 / 328 | 82% | 63.11 | 146 / 178 |
uterus | 98% | 4977.42 | 166 / 170 | 63% | 65.92 | 289 / 459 |
kidney | 99% | 6695.10 | 88 / 89 | 61% | 28.19 | 551 / 901 |
bladder | 90% | 6714.90 | 19 / 21 | 57% | 96.13 | 285 / 504 |
skin | 78% | 2528.00 | 1407 / 1809 | 64% | 59.88 | 304 / 472 |
esophagus | 91% | 5696.19 | 1308 / 1445 | 40% | 35.25 | 74 / 183 |
spleen | 100% | 7319.24 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 8790.87 | 1199 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 5488.02 | 1318 / 1335 | 0% | 0 | 0 / 0 |
brain | 69% | 2444.76 | 1834 / 2642 | 29% | 13.76 | 201 / 705 |
muscle | 96% | 3982.61 | 772 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 64.18 | 73 / 80 |
heart | 90% | 3420.42 | 772 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 68% | 1666.26 | 176 / 258 | 4% | 2.24 | 9 / 230 |
peripheral blood | 66% | 5222.13 | 613 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 22% | 13.74 | 10 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0005730 | Cellular component | nucleolus |
GO_0005615 | Cellular component | extracellular space |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0016020 | Cellular component | membrane |
GO_0001650 | Cellular component | fibrillar center |
GO_0008430 | Molecular function | selenium binding |
GO_0018549 | Molecular function | methanethiol oxidase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SELENBP1 |
Protein name | Methanethiol oxidase (MTO) (EC 1.8.3.4) (56 kDa selenium-binding protein) (SBP56) (SP56) (Selenium-binding protein 1) Methanethiol oxidase (MTO) (EC 1.8.3.4) (Selenium-binding protein 1) Selenium binding protein 1 |
Synonyms | hCG_18906 SBP |
Description | FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria . Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport (By similarity). . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . FUNCTION: Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria. Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport. . |
Accessions | ENST00000455397.5 F2Z2W8 A6PVX1 ENST00000455839.5 ENST00000443708.5 ENST00000427977.6 Q9H8A8 H0Y532 F8WBA9 ENST00000447402.7 [Q13228-3] ENST00000458566.5 Q13228 ENST00000368868.10 [Q13228-1] ENST00000424475.5 F8WCR4 ENST00000423070.5 ENST00000426705.6 [Q13228-4] C9JVL0 ENST00000427867.2 |