SEC23B | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
plasma cell	7 studies	24% ± 10%	Explore
macrophage	6 studies	21% ± 4%	Explore
goblet cell	5 studies	23% ± 9%	Explore
epithelial cell	4 studies	32% ± 11%	Explore
oligodendrocyte	4 studies	19% ± 3%	Explore
classical monocyte	3 studies	20% ± 1%	Explore
ciliated cell	3 studies	24% ± 6%	Explore
GABAergic neuron	3 studies	32% ± 1%	Explore
glutamatergic neuron	3 studies	37% ± 4%	Explore
dendritic cell	3 studies	26% ± 2%	Explore
abnormal cell	3 studies	24% ± 7%	Explore
basal cell	3 studies	20% ± 2%	Explore
plasmacytoid dendritic cell	3 studies	21% ± 4%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	5 studies	26% ± 6%	Explore
liver	3 studies	22% ± 7%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
stomach	100%	2966.69	359 / 359	100%	79.49	286 / 286
brain	100%	2247.53	2632 / 2642	100%	78.90	705 / 705
esophagus	100%	2150.48	1439 / 1445	100%	62.83	183 / 183
lung	100%	3346.41	577 / 578	100%	70.56	1152 / 1155
ovary	100%	1873.58	180 / 180	100%	50.62	428 / 430
breast	100%	2489.71	459 / 459	99%	97.03	1112 / 1118
prostate	100%	2819.13	245 / 245	99%	115.26	499 / 502
pancreas	100%	4147.26	328 / 328	99%	48.89	176 / 178
intestine	100%	1889.21	962 / 966	99%	81.02	523 / 527
thymus	100%	3353.26	653 / 653	98%	64.58	594 / 605
uterus	100%	1677.82	170 / 170	97%	57.92	446 / 459
skin	100%	2881.90	1808 / 1809	97%	62.38	456 / 472
kidney	100%	3134.89	89 / 89	96%	61.76	867 / 901
bladder	100%	1807.00	21 / 21	96%	60.73	484 / 504
adrenal gland	100%	5393.28	258 / 258	91%	47.85	209 / 230
liver	98%	2162.73	222 / 226	92%	38.79	375 / 406
lymph node	0%	0	0 / 0	100%	58.91	29 / 29
spleen	100%	3116.08	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	59.81	45 / 45
adipose	100%	2066.38	1203 / 1204	0%	0	0 / 0
blood vessel	99%	1715.95	1327 / 1335	0%	0	0 / 0
peripheral blood	96%	3410.84	895 / 929	0%	0	0 / 0
heart	80%	783.75	688 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	76%	22.78	61 / 80
muscle	42%	284.45	339 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

III. Associated gene sets

GO_0006886	Biological process	intracellular protein transport
GO_0090110	Biological process	COPII-coated vesicle cargo loading
GO_0005789	Cellular component	endoplasmic reticulum membrane
GO_0005783	Cellular component	endoplasmic reticulum
GO_0005829	Cellular component	cytosol
GO_0030127	Cellular component	COPII vesicle coat
GO_0070971	Cellular component	endoplasmic reticulum exit site
GO_0048471	Cellular component	perinuclear region of cytoplasm
GO_0012505	Cellular component	endomembrane system
GO_0005515	Molecular function	protein binding
GO_0008270	Molecular function	zinc ion binding
GO_0005096	Molecular function	GTPase activator activity

IV. Literature review

[source]

Gene name	SEC23B
Protein name	Protein transport protein SEC23 SEC23 homolog B, COPII coat complex component Protein transport protein Sec23B (hSec23B) (SEC23-related protein B)
Synonyms
Description	FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. . FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. . FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. . FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. . FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. . FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. .
Accessions	ENST00000336714.8 A0A2R8YFH5 ENST00000650089.1 ENST00000643747.1 ENST00000377465.6 Q5QPE1 ENST00000450074.6 ENST00000262544.6 A0A2R8Y7S7 ENST00000422877.1 ENST00000645851.1 A0A2R8Y633 A0A2R8YF30 Q5QPE2 ENST00000474619.1 ENST00000646240.1 Q15437

SEC23B report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review