Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 13 studies | 58% ± 14% | |
oligodendrocyte precursor cell | 12 studies | 33% ± 13% | |
fibroblast | 11 studies | 40% ± 12% | |
astrocyte | 10 studies | 33% ± 21% | |
GABAergic neuron | 9 studies | 60% ± 16% | |
glutamatergic neuron | 9 studies | 44% ± 16% | |
endothelial cell | 8 studies | 35% ± 14% | |
adipocyte | 8 studies | 41% ± 14% | |
smooth muscle cell | 8 studies | 40% ± 9% | |
epithelial cell | 7 studies | 31% ± 19% | |
ciliated cell | 7 studies | 49% ± 29% | |
interneuron | 6 studies | 57% ± 18% | |
basal cell | 6 studies | 32% ± 19% | |
endothelial cell of lymphatic vessel | 6 studies | 27% ± 11% | |
macrophage | 5 studies | 27% ± 8% | |
cardiac muscle cell | 5 studies | 25% ± 4% | |
type II pneumocyte | 5 studies | 26% ± 5% | |
neuron | 4 studies | 49% ± 29% | |
club cell | 4 studies | 39% ± 16% | |
GABAergic interneuron | 3 studies | 55% ± 3% | |
granule cell | 3 studies | 28% ± 17% | |
GABAergic amacrine cell | 3 studies | 31% ± 13% | |
amacrine cell | 3 studies | 46% ± 37% | |
retinal ganglion cell | 3 studies | 56% ± 27% | |
rod bipolar cell | 3 studies | 74% ± 35% | |
ependymal cell | 3 studies | 64% ± 15% | |
pericyte | 3 studies | 22% ± 5% | |
respiratory goblet cell | 3 studies | 52% ± 17% | |
mesothelial cell | 3 studies | 59% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 96% | 905.44 | 236 / 245 | 92% | 22.27 | 461 / 502 |
lung | 99% | 2323.54 | 575 / 578 | 80% | 15.65 | 920 / 1155 |
pancreas | 100% | 3096.26 | 328 / 328 | 66% | 5.98 | 118 / 178 |
kidney | 96% | 893.55 | 85 / 89 | 71% | 7.50 | 636 / 901 |
bladder | 100% | 2858.14 | 21 / 21 | 58% | 7.28 | 292 / 504 |
esophagus | 93% | 974.65 | 1337 / 1445 | 63% | 12.31 | 116 / 183 |
uterus | 97% | 1235.88 | 165 / 170 | 58% | 6.53 | 266 / 459 |
ovary | 97% | 1206.99 | 174 / 180 | 58% | 5.73 | 250 / 430 |
breast | 99% | 1256.94 | 454 / 459 | 47% | 3.23 | 523 / 1118 |
stomach | 96% | 856.26 | 345 / 359 | 35% | 2.92 | 101 / 286 |
intestine | 99% | 1844.49 | 959 / 966 | 20% | 1.58 | 107 / 527 |
thymus | 48% | 256.36 | 316 / 653 | 64% | 9.22 | 389 / 605 |
blood vessel | 100% | 4224.95 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3209.00 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1529.08 | 1198 / 1204 | 0% | 0 | 0 / 0 |
skin | 72% | 598.44 | 1305 / 1809 | 18% | 1.55 | 83 / 472 |
tonsil | 0% | 0 | 0 / 0 | 89% | 12.50 | 40 / 45 |
brain | 41% | 244.02 | 1073 / 2642 | 44% | 3.09 | 311 / 705 |
eye | 0% | 0 | 0 / 0 | 66% | 4.19 | 53 / 80 |
heart | 50% | 241.18 | 431 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 48% | 2.22 | 14 / 29 |
adrenal gland | 12% | 58.60 | 30 / 258 | 19% | 1.55 | 44 / 230 |
muscle | 31% | 144.51 | 246 / 803 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 11% | 0.79 | 45 / 406 |
peripheral blood | 2% | 9.42 | 17 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060998 | Biological process | regulation of dendritic spine development |
GO_0007416 | Biological process | synapse assembly |
GO_0048148 | Biological process | behavioral response to cocaine |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0010842 | Biological process | retina layer formation |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0042802 | Molecular function | identical protein binding |
Gene name | SDK1 |
Protein name | Sidekick cell adhesion molecule 1 Protein sidekick-1 |
Synonyms | |
Description | FUNCTION: Adhesion molecule that promotes lamina-specific synaptic connections in the retina. Expressed in specific subsets of interneurons and retinal ganglion cells (RGCs) and promotes synaptic connectivity via homophilic interactions. . |
Accessions | ENST00000426596.1 Q7Z5N4 ENST00000389531.7 F8W6X9 H7C255 ENST00000404826.7 [Q7Z5N4-1] |