Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 19% ± 3% | |
classical monocyte | 3 studies | 22% ± 5% | |
conventional dendritic cell | 3 studies | 24% ± 7% | |
non-classical monocyte | 3 studies | 24% ± 7% | |
epithelial cell | 3 studies | 29% ± 7% | |
glutamatergic neuron | 3 studies | 25% ± 5% | |
dendritic cell | 3 studies | 28% ± 9% | |
natural killer cell | 3 studies | 16% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 19% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3867.70 | 1445 / 1445 | 100% | 54.65 | 183 / 183 |
liver | 100% | 2036.31 | 226 / 226 | 100% | 44.74 | 406 / 406 |
ovary | 100% | 4762.73 | 180 / 180 | 100% | 53.46 | 430 / 430 |
pancreas | 100% | 2446.48 | 328 / 328 | 100% | 60.17 | 178 / 178 |
skin | 100% | 4919.41 | 1809 / 1809 | 100% | 84.97 | 472 / 472 |
thymus | 100% | 4461.18 | 653 / 653 | 100% | 74.87 | 605 / 605 |
uterus | 100% | 5284.50 | 170 / 170 | 100% | 74.04 | 459 / 459 |
adrenal gland | 100% | 3010.68 | 258 / 258 | 100% | 47.68 | 229 / 230 |
prostate | 100% | 4039.33 | 245 / 245 | 99% | 59.45 | 499 / 502 |
kidney | 100% | 2969.69 | 89 / 89 | 99% | 39.89 | 895 / 901 |
brain | 100% | 3068.84 | 2638 / 2642 | 99% | 74.22 | 701 / 705 |
intestine | 100% | 4204.87 | 966 / 966 | 99% | 57.09 | 523 / 527 |
stomach | 100% | 3298.72 | 359 / 359 | 99% | 52.36 | 283 / 286 |
lung | 100% | 4067.91 | 578 / 578 | 99% | 58.71 | 1141 / 1155 |
bladder | 100% | 4525.90 | 21 / 21 | 99% | 66.48 | 497 / 504 |
breast | 100% | 4143.18 | 459 / 459 | 97% | 50.46 | 1088 / 1118 |
adipose | 100% | 4024.82 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4151.30 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 122.01 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 105.38 | 29 / 29 |
muscle | 100% | 3681.54 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5635.24 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 75.18 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 84.12 | 1 / 1 |
peripheral blood | 99% | 5138.27 | 923 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 2488.76 | 850 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0000481 | Biological process | maturation of 5S rRNA |
GO_0045292 | Biological process | mRNA cis splicing, via spliceosome |
GO_0000387 | Biological process | spliceosomal snRNP assembly |
GO_0045585 | Biological process | positive regulation of cytotoxic T cell differentiation |
GO_0015030 | Cellular component | Cajal body |
GO_0016607 | Cellular component | nuclear speck |
GO_0046540 | Cellular component | U4/U6 x U5 tri-snRNP complex |
GO_0071013 | Cellular component | catalytic step 2 spliceosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0071005 | Cellular component | U2-type precatalytic spliceosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | SART1 |
Protein name | Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP U4/U6.U5 tri-snRNP-associated protein 1 (SNU66 homolog) (hSnu66) (Squamous cell carcinoma antigen recognized by T-cells 1) (SART-1) (hSART-1) (U4/U6.U5 tri-snRNP-associated 110 kDa protein) (allergen Hom s 1) |
Synonyms | |
Description | FUNCTION: Plays a role in mRNA splicing as a component of the U4/U6-U5 tri-snRNP, one of the building blocks of the spliceosome. May also bind to DNA. . |
Accessions | O43290 ENST00000530251.1 ENST00000312397.10 [O43290-1] E9PQI8 |