Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 9 studies | 38% ± 10% | |
adipocyte | 7 studies | 34% ± 11% | |
basal cell | 7 studies | 49% ± 22% | |
respiratory goblet cell | 6 studies | 35% ± 17% | |
secretory cell | 6 studies | 38% ± 23% | |
hepatocyte | 5 studies | 68% ± 31% | |
club cell | 4 studies | 32% ± 18% | |
duct epithelial cell | 4 studies | 74% ± 6% | |
epithelial cell | 4 studies | 36% ± 6% | |
T cell | 4 studies | 41% ± 34% | |
endothelial cell | 4 studies | 52% ± 24% | |
deuterosomal cell | 3 studies | 20% ± 1% | |
endothelial cell of sinusoid | 3 studies | 59% ± 27% | |
hepatic stellate cell | 3 studies | 41% ± 22% | |
serous secreting cell | 3 studies | 20% ± 0% | |
macrophage | 3 studies | 60% ± 30% | |
mucus secreting cell | 3 studies | 45% ± 29% | |
myoepithelial cell | 3 studies | 54% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 490030.94 | 225 / 226 | 79% | 3117.97 | 319 / 406 |
breast | 98% | 28800.78 | 449 / 459 | 61% | 233.06 | 685 / 1118 |
lung | 46% | 2021.57 | 265 / 578 | 46% | 95.76 | 535 / 1155 |
adipose | 85% | 25534.94 | 1028 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 16% | 592.30 | 237 / 1445 | 61% | 149.08 | 111 / 183 |
pancreas | 10% | 213.94 | 32 / 328 | 62% | 138.80 | 111 / 178 |
skin | 49% | 1698.13 | 895 / 1809 | 6% | 12.24 | 30 / 472 |
tonsil | 0% | 0 | 0 / 0 | 56% | 92.88 | 25 / 45 |
uterus | 3% | 69.48 | 5 / 170 | 49% | 193.24 | 227 / 459 |
muscle | 50% | 6610.82 | 404 / 803 | 0% | 0 | 0 / 0 |
stomach | 15% | 629.99 | 55 / 359 | 34% | 153.27 | 97 / 286 |
kidney | 19% | 544.55 | 17 / 89 | 29% | 195.13 | 263 / 901 |
blood vessel | 45% | 2152.33 | 603 / 1335 | 0% | 0 | 0 / 0 |
bladder | 14% | 1071.24 | 3 / 21 | 31% | 114.09 | 154 / 504 |
prostate | 24% | 1301.43 | 59 / 245 | 21% | 43.34 | 103 / 502 |
intestine | 12% | 619.02 | 119 / 966 | 31% | 115.28 | 164 / 527 |
adrenal gland | 38% | 991.72 | 97 / 258 | 2% | 3.27 | 4 / 230 |
ovary | 0% | 0 | 0 / 180 | 37% | 63.13 | 157 / 430 |
thymus | 9% | 306.61 | 60 / 653 | 16% | 117.27 | 95 / 605 |
brain | 0% | 5.03 | 12 / 2642 | 13% | 61.41 | 89 / 705 |
heart | 6% | 168.45 | 55 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 6% | 679.54 | 52 / 929 | 0% | 0 | 0 / 0 |
spleen | 4% | 795.80 | 10 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030593 | Biological process | neutrophil chemotaxis |
GO_0001819 | Biological process | positive regulation of cytokine production |
GO_0050728 | Biological process | negative regulation of inflammatory response |
GO_0006953 | Biological process | acute-phase response |
GO_0007204 | Biological process | positive regulation of cytosolic calcium ion concentration |
GO_0050708 | Biological process | regulation of protein secretion |
GO_0048247 | Biological process | lymphocyte chemotaxis |
GO_0045785 | Biological process | positive regulation of cell adhesion |
GO_0032732 | Biological process | positive regulation of interleukin-1 production |
GO_0048246 | Biological process | macrophage chemotaxis |
GO_0030168 | Biological process | platelet activation |
GO_0071682 | Cellular component | endocytic vesicle lumen |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005576 | Cellular component | extracellular region |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0034364 | Cellular component | high-density lipoprotein particle |
GO_0008201 | Molecular function | heparin binding |
GO_0001664 | Molecular function | G protein-coupled receptor binding |
Gene name | SAA1 |
Protein name | Serum amyloid A protein Serum amyloid A-1 protein (SAA) [Cleaved into: Amyloid protein A (Amyloid fibril protein AA); Serum amyloid protein A(2-104); Serum amyloid protein A(3-104); Serum amyloid protein A(2-103); Serum amyloid protein A(2-102); Serum amyloid protein A(4-101)] |
Synonyms | |
Description | FUNCTION: Major acute phase protein. FUNCTION: Major acute phase reactant. Apolipoprotein of the HDL complex. . |
Accessions | ENST00000532858.5 ENST00000672712.1 ENST00000672418.1 ENST00000356524.9 ENST00000689650.1 ENST00000649195.1 ENST00000405158.2 A0A3B3ISW8 ENST00000672662.1 P0DJI8 |