Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 12 studies | 39% ± 12% | |
oligodendrocyte | 11 studies | 30% ± 10% | |
endothelial cell | 6 studies | 22% ± 10% | |
oligodendrocyte precursor cell | 5 studies | 20% ± 4% | |
glutamatergic neuron | 4 studies | 45% ± 16% | |
endothelial cell of lymphatic vessel | 4 studies | 19% ± 2% | |
retinal rod cell | 3 studies | 19% ± 2% | |
GABAergic neuron | 3 studies | 43% ± 9% | |
macrophage | 3 studies | 21% ± 3% | |
transit amplifying cell | 3 studies | 40% ± 27% | |
astrocyte | 3 studies | 37% ± 21% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 29% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
skin | 100% | 1127.67 | 1807 / 1809 | 97% | 6.66 | 459 / 472 |
esophagus | 100% | 715.40 | 1444 / 1445 | 96% | 3.01 | 176 / 183 |
uterus | 100% | 1358.20 | 170 / 170 | 95% | 3.51 | 438 / 459 |
brain | 97% | 829.98 | 2574 / 2642 | 97% | 2.89 | 683 / 705 |
breast | 100% | 1086.27 | 459 / 459 | 94% | 2.76 | 1046 / 1118 |
lung | 100% | 749.41 | 576 / 578 | 88% | 2.24 | 1018 / 1155 |
stomach | 99% | 581.12 | 357 / 359 | 83% | 1.74 | 236 / 286 |
bladder | 100% | 835.00 | 21 / 21 | 80% | 2.06 | 402 / 504 |
kidney | 100% | 828.40 | 89 / 89 | 77% | 1.82 | 695 / 901 |
intestine | 100% | 884.79 | 966 / 966 | 76% | 1.51 | 399 / 527 |
thymus | 100% | 860.63 | 653 / 653 | 75% | 1.42 | 453 / 605 |
pancreas | 97% | 398.01 | 318 / 328 | 71% | 1.22 | 127 / 178 |
adrenal gland | 100% | 529.57 | 257 / 258 | 62% | 1.06 | 143 / 230 |
prostate | 100% | 823.31 | 244 / 245 | 57% | 0.93 | 286 / 502 |
ovary | 100% | 1572.88 | 180 / 180 | 49% | 0.90 | 211 / 430 |
liver | 100% | 549.95 | 225 / 226 | 42% | 0.75 | 170 / 406 |
adipose | 100% | 906.71 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 22.07 | 80 / 80 |
spleen | 100% | 946.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 3.62 | 45 / 45 |
blood vessel | 100% | 839.37 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 745.72 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 589.56 | 832 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 4.34 | 26 / 29 |
peripheral blood | 55% | 967.58 | 507 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032053 | Biological process | ciliary basal body organization |
GO_0010457 | Biological process | centriole-centriole cohesion |
GO_0007099 | Biological process | centriole replication |
GO_0007368 | Biological process | determination of left/right symmetry |
GO_0005814 | Cellular component | centriole |
GO_0005813 | Cellular component | centrosome |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | RTTN |
Protein name | Rotatin |
Synonyms | hCG_1810896 |
Description | FUNCTION: Involved in the genetic cascade that governs left-right specification. Plays a role in the maintenance of a normal ciliary structure. Required for correct asymmetric expression of NODAL, LEFTY and PITX2. . |
Accessions | ENST00000578780.2 A0A1W2PR32 A0A1W2PR21 J3KTD2 ENST00000255674.11 [Q86VV8-3] ENST00000638298.1 ENST00000677824.1 J3KT00 A0A1W2PQI7 ENST00000679113.1 ENST00000640769.2 [Q86VV8-1] ENST00000583043.5 ENST00000638251.1 ENST00000639487.1 A0A1W2PR96 ENST00000581161.5 A0A1W2PPP3 Q86VV8 J3KSV7 ENST00000579986.6 ENST00000640376.1 A0A1W2PPP7 A0A7I2V5W4 ENST00000640931.1 A0A7I2V670 |