Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| ciliated cell | 13 studies | 30% ± 9% | |
| glutamatergic neuron | 5 studies | 46% ± 23% | |
| GABAergic neuron | 4 studies | 37% ± 14% | |
| astrocyte | 4 studies | 26% ± 7% | |
| interneuron | 3 studies | 38% ± 19% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 5 studies | 35% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 420.17 | 457 / 459 | 99% | 4.55 | 1112 / 1118 |
| brain | 99% | 768.42 | 2616 / 2642 | 99% | 4.52 | 699 / 705 |
| ovary | 100% | 707.31 | 180 / 180 | 97% | 2.88 | 418 / 430 |
| thymus | 100% | 612.59 | 653 / 653 | 96% | 2.73 | 583 / 605 |
| prostate | 100% | 491.40 | 245 / 245 | 95% | 2.84 | 476 / 502 |
| bladder | 100% | 420.29 | 21 / 21 | 93% | 2.57 | 469 / 504 |
| uterus | 100% | 651.90 | 170 / 170 | 93% | 2.67 | 427 / 459 |
| esophagus | 99% | 323.52 | 1429 / 1445 | 93% | 2.87 | 171 / 183 |
| kidney | 99% | 387.07 | 88 / 89 | 93% | 4.19 | 841 / 901 |
| adrenal gland | 100% | 592.14 | 257 / 258 | 91% | 2.59 | 209 / 230 |
| lung | 93% | 394.32 | 538 / 578 | 97% | 2.84 | 1120 / 1155 |
| intestine | 94% | 311.34 | 912 / 966 | 93% | 2.55 | 491 / 527 |
| skin | 99% | 857.70 | 1792 / 1809 | 86% | 2.47 | 404 / 472 |
| pancreas | 87% | 185.66 | 285 / 328 | 96% | 2.48 | 170 / 178 |
| stomach | 83% | 225.05 | 298 / 359 | 94% | 2.69 | 269 / 286 |
| ureter | 0% | 0 | 0 / 0 | 100% | 1.04 | 1 / 1 |
| adipose | 99% | 331.25 | 1186 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 98% | 353.55 | 1313 / 1335 | 0% | 0 | 0 / 0 |
| spleen | 88% | 171.10 | 213 / 241 | 0% | 0 | 0 / 0 |
| heart | 83% | 198.48 | 717 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 80% | 1.67 | 36 / 45 |
| lymph node | 0% | 0 | 0 / 0 | 59% | 0.94 | 17 / 29 |
| liver | 26% | 38.71 | 58 / 226 | 19% | 0.42 | 76 / 406 |
| eye | 0% | 0 | 0 / 0 | 43% | 0.72 | 34 / 80 |
| muscle | 41% | 68.13 | 328 / 803 | 0% | 0 | 0 / 0 |
| peripheral blood | 20% | 123.73 | 182 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0008589 | Biological process | regulation of smoothened signaling pathway |
| GO_1905515 | Biological process | non-motile cilium assembly |
| GO_0001701 | Biological process | in utero embryonic development |
| GO_0060039 | Biological process | pericardium development |
| GO_0007368 | Biological process | determination of left/right symmetry |
| GO_0046548 | Biological process | retinal rod cell development |
| GO_0021532 | Biological process | neural tube patterning |
| GO_0007163 | Biological process | establishment or maintenance of cell polarity |
| GO_0001822 | Biological process | kidney development |
| GO_0001889 | Biological process | liver development |
| GO_0045744 | Biological process | negative regulation of G protein-coupled receptor signaling pathway |
| GO_0035115 | Biological process | embryonic forelimb morphogenesis |
| GO_0021772 | Biological process | olfactory bulb development |
| GO_0035116 | Biological process | embryonic hindlimb morphogenesis |
| GO_0043584 | Biological process | nose development |
| GO_0090102 | Biological process | cochlea development |
| GO_0021670 | Biological process | lateral ventricle development |
| GO_0022038 | Biological process | corpus callosum development |
| GO_0021549 | Biological process | cerebellum development |
| GO_0001736 | Biological process | establishment of planar polarity |
| GO_0032391 | Cellular component | photoreceptor connecting cilium |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005813 | Cellular component | centrosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0035253 | Cellular component | ciliary rootlet |
| GO_0005930 | Cellular component | axoneme |
| GO_0005911 | Cellular component | cell-cell junction |
| GO_0005879 | Cellular component | axonemal microtubule |
| GO_0005929 | Cellular component | cilium |
| GO_0005829 | Cellular component | cytosol |
| GO_0035869 | Cellular component | ciliary transition zone |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0005923 | Cellular component | bicellular tight junction |
| GO_0036064 | Cellular component | ciliary basal body |
| GO_0031870 | Molecular function | thromboxane A2 receptor binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | RPGRIP1L |
| Protein name | RPGRIP1 like Protein fantom (Nephrocystin-8) (RPGR-interacting protein 1-like protein) (RPGRIP1-like protein) RPGRIP1L protein |
| Synonyms | NPHP8 KIAA1005 FTM |
| Description | FUNCTION: Negatively regulates signaling through the G-protein coupled thromboxane A2 receptor (TBXA2R) . May be involved in mechanisms like programmed cell death, craniofacial development, patterning of the limbs, and formation of the left-right axis (By similarity). Involved in the organization of apical junctions; the function is proposed to implicate a NPHP1-4-8 module. Does not seem to be strictly required for ciliogenesis . Involved in establishment of planar cell polarity such as in cochlear sensory epithelium and is proposed to implicate stabilization of disheveled proteins (By similarity). Involved in regulation of proteasomal activity at the primary cilium probably implicating association with PSDM2 (By similarity). . |
| Accessions | ENST00000262135.9 [Q68CZ1-2] ENST00000679110.1 Q68CZ1 ENST00000564374.5 ENST00000621565.5 ENST00000562230.5 ENST00000566096.5 B7ZKJ9 H3BPS4 H3BS47 J3QLR9 H3BV03 ENST00000680193.1 A0A087WX34 I3L1B5 H3BPF5 ENST00000563746.5 ENST00000569716.1 I3L2P2 ENST00000568653.7 A0A7P0TB06 ENST00000647211.2 [Q68CZ1-1] ENST00000562588.5 |
