Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| basal cell | 8 studies | 22% ± 7% | |
| endothelial cell | 7 studies | 20% ± 4% | |
| fibroblast | 6 studies | 22% ± 9% | |
| epithelial cell | 5 studies | 38% ± 19% | |
| smooth muscle cell | 4 studies | 16% ± 2% | |
| ciliated cell | 4 studies | 26% ± 9% | |
| conventional dendritic cell | 3 studies | 20% ± 7% | |
| connective tissue cell | 3 studies | 19% ± 1% | |
| erythroblast | 3 studies | 32% ± 6% | |
| pericyte | 3 studies | 18% ± 2% | |
| astrocyte | 3 studies | 19% ± 2% | |
| macrophage | 3 studies | 22% ± 1% | |
| GABAergic neuron | 3 studies | 27% ± 4% | |
| glutamatergic neuron | 3 studies | 36% ± 6% | |
| dendritic cell | 3 studies | 22% ± 3% | |
| intestinal crypt stem cell | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| bladder | 100% | 1686.33 | 21 / 21 | 100% | 26.81 | 504 / 504 |
| breast | 100% | 1556.72 | 459 / 459 | 100% | 30.48 | 1118 / 1118 |
| esophagus | 100% | 1378.70 | 1445 / 1445 | 100% | 27.81 | 183 / 183 |
| liver | 100% | 1253.07 | 226 / 226 | 100% | 21.16 | 406 / 406 |
| ovary | 100% | 1554.10 | 180 / 180 | 100% | 25.87 | 430 / 430 |
| pancreas | 100% | 1150.96 | 328 / 328 | 100% | 20.49 | 178 / 178 |
| prostate | 100% | 1449.90 | 245 / 245 | 100% | 33.52 | 502 / 502 |
| thymus | 100% | 1366.28 | 653 / 653 | 100% | 26.63 | 605 / 605 |
| uterus | 100% | 1552.29 | 170 / 170 | 100% | 33.18 | 459 / 459 |
| brain | 100% | 901.10 | 2632 / 2642 | 100% | 19.12 | 705 / 705 |
| lung | 99% | 1173.28 | 574 / 578 | 100% | 26.38 | 1155 / 1155 |
| stomach | 100% | 1053.26 | 359 / 359 | 99% | 29.16 | 284 / 286 |
| intestine | 100% | 1238.81 | 965 / 966 | 99% | 31.11 | 523 / 527 |
| adrenal gland | 100% | 1351.50 | 258 / 258 | 99% | 18.58 | 227 / 230 |
| skin | 100% | 1822.07 | 1808 / 1809 | 99% | 28.80 | 465 / 472 |
| kidney | 100% | 1181.51 | 89 / 89 | 98% | 25.94 | 887 / 901 |
| adipose | 100% | 1693.25 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 28.43 | 29 / 29 |
| muscle | 100% | 2087.03 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 1068.31 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 27.77 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 9.93 | 1 / 1 |
| blood vessel | 100% | 1272.28 | 1333 / 1335 | 0% | 0 | 0 / 0 |
| heart | 98% | 1242.88 | 848 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 96% | 23.07 | 77 / 80 |
| peripheral blood | 39% | 727.32 | 363 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000463 | Biological process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO_0042273 | Biological process | ribosomal large subunit biogenesis |
| GO_1902570 | Biological process | protein localization to nucleolus |
| GO_0000027 | Biological process | ribosomal large subunit assembly |
| GO_1901796 | Biological process | regulation of signal transduction by p53 class mediator |
| GO_0005730 | Cellular component | nucleolus |
| GO_0005694 | Cellular component | chromosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0008097 | Molecular function | 5S rRNA binding |
| GO_0019843 | Molecular function | rRNA binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | RPF2 |
| Protein name | Ribosome production factor 2 homolog (Ribosome biogenesis protein RPF2 homolog) Ribosome production factor 2 homolog (Brix domain-containing protein 1) (Ribosome biogenesis protein RPF2 homolog) Ribosome production factor 2 homolog |
| Synonyms | BXDC1 |
| Description | FUNCTION: Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus. . |
| Accessions | ENST00000607388.1 Q5VXM9 ENST00000441448.7 ENST00000425871.1 ENST00000368864.8 U3KQN5 Q5VXN0 Q9H7B2 |