Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 8 studies | 22% ± 7% | |
endothelial cell | 7 studies | 20% ± 4% | |
fibroblast | 6 studies | 22% ± 9% | |
epithelial cell | 5 studies | 38% ± 19% | |
smooth muscle cell | 4 studies | 16% ± 2% | |
ciliated cell | 4 studies | 26% ± 9% | |
conventional dendritic cell | 3 studies | 20% ± 7% | |
connective tissue cell | 3 studies | 19% ± 1% | |
erythroblast | 3 studies | 32% ± 6% | |
pericyte | 3 studies | 18% ± 2% | |
astrocyte | 3 studies | 19% ± 2% | |
macrophage | 3 studies | 22% ± 1% | |
GABAergic neuron | 3 studies | 27% ± 4% | |
glutamatergic neuron | 3 studies | 36% ± 6% | |
dendritic cell | 3 studies | 22% ± 3% | |
intestinal crypt stem cell | 3 studies | 19% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 1686.33 | 21 / 21 | 100% | 26.81 | 504 / 504 |
breast | 100% | 1556.72 | 459 / 459 | 100% | 30.48 | 1118 / 1118 |
esophagus | 100% | 1378.70 | 1445 / 1445 | 100% | 27.81 | 183 / 183 |
liver | 100% | 1253.07 | 226 / 226 | 100% | 21.16 | 406 / 406 |
ovary | 100% | 1554.10 | 180 / 180 | 100% | 25.87 | 430 / 430 |
pancreas | 100% | 1150.96 | 328 / 328 | 100% | 20.49 | 178 / 178 |
prostate | 100% | 1449.90 | 245 / 245 | 100% | 33.52 | 502 / 502 |
thymus | 100% | 1366.28 | 653 / 653 | 100% | 26.63 | 605 / 605 |
uterus | 100% | 1552.29 | 170 / 170 | 100% | 33.18 | 459 / 459 |
brain | 100% | 901.10 | 2632 / 2642 | 100% | 19.12 | 705 / 705 |
lung | 99% | 1173.28 | 574 / 578 | 100% | 26.38 | 1155 / 1155 |
stomach | 100% | 1053.26 | 359 / 359 | 99% | 29.16 | 284 / 286 |
intestine | 100% | 1238.81 | 965 / 966 | 99% | 31.11 | 523 / 527 |
adrenal gland | 100% | 1351.50 | 258 / 258 | 99% | 18.58 | 227 / 230 |
skin | 100% | 1822.07 | 1808 / 1809 | 99% | 28.80 | 465 / 472 |
kidney | 100% | 1181.51 | 89 / 89 | 98% | 25.94 | 887 / 901 |
adipose | 100% | 1693.25 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.43 | 29 / 29 |
muscle | 100% | 2087.03 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1068.31 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.77 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.93 | 1 / 1 |
blood vessel | 100% | 1272.28 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1242.88 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 23.07 | 77 / 80 |
peripheral blood | 39% | 727.32 | 363 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000463 | Biological process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0042273 | Biological process | ribosomal large subunit biogenesis |
GO_1902570 | Biological process | protein localization to nucleolus |
GO_0000027 | Biological process | ribosomal large subunit assembly |
GO_1901796 | Biological process | regulation of signal transduction by p53 class mediator |
GO_0005730 | Cellular component | nucleolus |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0008097 | Molecular function | 5S rRNA binding |
GO_0019843 | Molecular function | rRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RPF2 |
Protein name | Ribosome production factor 2 homolog (Ribosome biogenesis protein RPF2 homolog) Ribosome production factor 2 homolog (Brix domain-containing protein 1) (Ribosome biogenesis protein RPF2 homolog) Ribosome production factor 2 homolog |
Synonyms | BXDC1 |
Description | FUNCTION: Involved in ribosomal large subunit assembly. May regulate the localization of the 5S RNP/5S ribonucleoprotein particle to the nucleolus. . |
Accessions | ENST00000607388.1 Q5VXM9 ENST00000441448.7 ENST00000425871.1 ENST00000368864.8 U3KQN5 Q5VXN0 Q9H7B2 |