Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 6 studies | 24% ± 5% | |
epithelial cell of proximal tubule | 4 studies | 23% ± 4% | |
intestinal crypt stem cell | 4 studies | 21% ± 5% |
Insufficient scRNA-seq data for expression of RNF186 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 91% | 774.09 | 81 / 89 | 56% | 22.25 | 506 / 901 |
pancreas | 100% | 871.92 | 328 / 328 | 36% | 4.18 | 64 / 178 |
intestine | 52% | 323.54 | 499 / 966 | 83% | 33.63 | 439 / 527 |
stomach | 0% | 0.14 | 1 / 359 | 67% | 22.74 | 191 / 286 |
bladder | 5% | 1.62 | 1 / 21 | 31% | 11.12 | 154 / 504 |
esophagus | 0% | 0.04 | 1 / 1445 | 32% | 6.49 | 58 / 183 |
breast | 27% | 30.61 | 122 / 459 | 1% | 0.10 | 11 / 1118 |
prostate | 12% | 9.88 | 30 / 245 | 3% | 0.20 | 16 / 502 |
liver | 13% | 6.71 | 29 / 226 | 1% | 0.11 | 6 / 406 |
lung | 0% | 0 | 0 / 578 | 11% | 2.41 | 126 / 1155 |
uterus | 1% | 0.24 | 1 / 170 | 7% | 1.02 | 31 / 459 |
ovary | 4% | 1.56 | 7 / 180 | 1% | 0.12 | 5 / 430 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0.02 | 1 / 230 |
skin | 0% | 0.12 | 5 / 1809 | 0% | 0 | 0 / 472 |
adipose | 0% | 0.39 | 3 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.15 | 2 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
brain | 0% | 0 | 0 / 2642 | 0% | 0 | 0 / 705 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
thymus | 0% | 0 | 0 / 653 | 0% | 0 | 0 / 605 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0070059 | Biological process | intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
GO_0051865 | Biological process | protein autoubiquitination |
GO_0070534 | Biological process | protein K63-linked ubiquitination |
GO_0035519 | Biological process | protein K29-linked ubiquitination |
GO_0070585 | Biological process | protein localization to mitochondrion |
GO_2000785 | Biological process | regulation of autophagosome assembly |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | RNF186 |
Protein name | E3 ubiquitin-protein ligase RNF186 (EC 2.3.2.27) (RING finger protein 186) |
Synonyms | |
Description | FUNCTION: E3 ubiquitin protein ligase that is part of an apoptotic signaling pathway activated by endoplasmic reticulum stress . Stimulates the expression of proteins specific of the unfolded protein response (UPR), ubiquitinates BNIP1 and regulates its localization to the mitochondrion and induces calcium release from the endoplasmic reticulum that ultimately leads to cell apoptosis . Plays a role in the maintenance of intestinal homeostasis and clearance of enteric pathogens. Upon NOD2 stimulation, ubiquitinates the ER stress sensor activating transcription factor 6/ATF6 and promotes the unfolded protein response UPR . Participates in basal level of autophagy maintenance by regulating the ubiquitination of EPHB2 and EPHB3. Upon stimulation by ligand EFNB1, ubiquitinates EPHB2 and further recruits MAP1LC3B for autophagy induction . Controls nutrient sensing by ubiquitinating Sestrin-2/SESN2, which is an intracellular sensor of cytosolic leucine and inhibitor of mTORC1 activity . . |
Accessions | Q9NXI6 ENST00000375121.4 |